SNP Profiles matching TSA 654

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CC
1._TSA_656___	__	__	AC	GG	CT	__	CC	CC	AA	CT	__	__	AA	__
2._TSA_656___	__	__	AC	GG	CT	__	CC	CC	AA	CT	__	__	AA	__
3._TSA_656___	__	__	AC	GG	CT	__	CC	CC	AA	CT	__	__	AA	__
4._TSA_656___	__	__	AC	GG	CT	__	CC	CC	AA	CT	__	__	AA	__
5._TSA_656___	__	__	AC	GG	CT	__	CC	CC	AA	CT	__	__	AA	__
6._TSA_656___	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
7._TSA_656___	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
8._TSA_656___	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
9._TSA_656___	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
10._TSA_656___	TT	CC	AC	GG	CT	GG	CC	CC	AA	CT	AA	GG	AA	CG
11._TSA_656___	TT	CC	CC	GG	TT	GG	CC	CC	AA	CT	AA	GG	AA	CC
12._GM_33___	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
13._GM_33___	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
14._GM_33___	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
15._GM_33___	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
16._GM_33___	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
17._GM_33___	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	AA	GG	AA	CG
18._ICS_10___	TT	CC	CC	GG	CT	GG	AC	CC	AG	TT	AA	GG	AA	CC
19._GM_33___	TT	CC	CC	GG	CT	GG	AC	CC	AG	CC	__	GG	AA	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
1._TSA_656___	AG	AA	CC	GT	GG	CC	__	CT	__	GG	__	__	__	CC
2._TSA_656___	AG	AA	CC	GT	GG	CC	__	CT	__	GG	__	__	__	CC
3._TSA_656___	AG	AA	CC	GT	GG	CC	__	CT	__	GG	__	__	__	CC
4._TSA_656___	AG	AA	CC	GT	GG	CC	__	CT	__	GG	__	__	__	CC
5._TSA_656___	AG	AA	CC	GT	GG	CC	__	CT	__	GG	__	__	__	CC
6._TSA_656___	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
7._TSA_656___	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
8._TSA_656___	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
9._TSA_656___	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
10._TSA_656___	AG	AA	CC	GT	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
11._TSA_656___	AG	AA	CC	GG	GG	CC	CC	CT	TT	GG	AG	TT	CC	CC
12._GM_33___	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
13._GM_33___	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
14._GM_33___	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
15._GM_33___	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
16._GM_33___	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
17._GM_33___	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC
18._ICS_10___	AG	AC	CC	GT	GG	AC	CC	CT	CT	GG	GG	TT	CC	CC
19._GM_33___	AG	AA	CC	GG	GG	CC	CC	CT	CT	GG	AG	TT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	TT	AA	CC	CC	GG	GG	TT	GT	CT	CC	CT	CG	AG
1._TSA_656___	__	TT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
2._TSA_656___	__	TT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
3._TSA_656___	__	TT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
4._TSA_656___	__	TT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
5._TSA_656___	__	TT	AA	__	CC	__	__	__	GT	__	__	CT	CG	AG
6._TSA_656___	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
7._TSA_656___	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
8._TSA_656___	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
9._TSA_656___	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
10._TSA_656___	CG	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	AG
11._TSA_656___	CG	TT	AA	CC	CC	GG	GG	TT	GT	CT	CC	TT	CG	AA
12._GM_33___	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
13._GM_33___	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
14._GM_33___	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
15._GM_33___	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
16._GM_33___	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
17._GM_33___	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG
18._ICS_10___	CG	TT	AA	CC	CC	GG	GG	TT	GG	CT	CC	CT	GG	AG
19._GM_33___	CG	CT	AA	CC	CC	GG	GG	TT	GT	TT	CC	CT	CG	GG

Input profile: TSA_654 RUQ_1029

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._TSA_656

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8825 1

Dapeng Zhang, 2016

2._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 2

Dapeng Zhang, 2016

3._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 3

Dapeng Zhang, 2016

4._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 6

Dapeng Zhang, 2016

5._TSA_656

97.9 %
24 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 10

Dapeng Zhang, 2016

6._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._TSA_656 GC-08-257-8-25

96.4 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._TSA_656 RUQ_1016

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

16._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._GM_33 GC-01-038-2-15

90.5 %
42 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

18._ICS_10 RUQ_827

90.5 %
42 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._GM_33 GC-01-038-2-15

90.2 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484