SNP Profiles matching BE 8

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTACCCTTCCAGAACCAACCGGGGCCAA
1._MAR_1___
____CCTTCC__AA__AACC______AA
2._MAR_20___
____CCTTCC__AA__AACC______AA
3._GS_13___
TTCCCCTTCCAGAACCAACCGGGGCCAA
4._MAR_9___
TTCCCCTTCCGGAACCAACCGGGGCCAA
5._GDL_7___
TTCCCCTTCCGGAACCAACCGGGGCCAA
6._GDL_3___
TTCCCCTTCCGGAACCAA__GGGG____
7._BE_10___
____CCTTCC__AACCAACC______AA
8._BE_10___
____CCTTCC__AACCAACC______AA
9._BE_10___
____CCTTCC__AACCAACC______AA
10._BE_10___
____CCTTCC__AACCAACC______AA
11._BE_10___
____CCTTCC__AACCAACC______AA
12._BE_10___
____CCTTCC__AACCAACC______AA
13._BE_10___
____CCTTCC__AACCAACC______AA
14._BE_10___
____CCTTCC__AACCAACC______AA
15._BE_10___
____CCTTCC__AACCAACC______AA
16._BE_10___
____CCTTCC__AACCAACC______AA
17._GU_207_/H___
____CCTTCC__AACCAACC______AA
18._GU_207_/H___
____CCTTCC__AACCAACC______AA
19._GU_207_/H___
____CCTTCC__AACCAACC______AA
20._GU_207_/H___
____CCTTCC__AACCAACC______AA
21._GU_207_/H___
____CCTTCC__AACCAACC______AA
22._GU_207_/H___
____CCTTCC__AACCAACC______AA
23._GU_207_/H___
____CCTTCC__AACCAACC______AA
24._GU_207_/H___
____CCTTCC__AACCAACC______AA
25._JA_9_/37_[POU]___
____CCTTCC__AACCAACC______AA
26._JA_9_/37_[POU]___
____CCTTCC__AACCAACC______AA
27._JA_9_/37_[POU]___
____CCTTCC__AACCAACC______AA
28._JA_9_/37_[POU]___
____CCTTCC__AACCAACC______AA
29._AMAZ_5_/2___
____CCTTCC__AACCAACC______AA
30._LCT_EEN_90_/S-7___
____CCTTCC__AA__AACC______AA
31._BE_10___
____CCTT____AACCAACC______AA
32._BE_10___
____CCTTCC__AACCAACC______AA
33._GU_207_/H___
______TTCC__AACCAACC______AA
34._GU_207_/H___
____CCTTCC____CCAACC______AA
35._LCT_EEN_62_/S-4___
TTCCCCTTCCGGAACCAACCGGGGCCAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCTTGGAACCTTTTGGGGTTACGGCCCC
1._MAR_1___
CCTTGGAA__TT__________GGCCCC
2._MAR_20___
CCTTGGAA__TT__________GGCCCC
3._GS_13___
CCTTGGAACCTTTTGGGGTTCCCGCCCC
4._MAR_9___
CCTTGGAACCTTTTGGGGTTAAGGCCCC
5._GDL_7___
CCTTGGAACCCCTTGGGGTTCCGGCCCC
6._GDL_3___
CC__GGAATTTTTTGG__TT____CCCC
7._BE_10___
CCTTCCAA__TT__GG______GG__CC
8._BE_10___
CCTTCCAA__TT__GG______GG__CC
9._BE_10___
CCTTCCAA__TT__GG______GG__CC
10._BE_10___
CCTTCCAA__TT__GG______GG__CC
11._BE_10___
CCTTCCAA__TT__GG______GG__CC
12._BE_10___
CCTTCCAA__TT__GG______GG__CC
13._BE_10___
CCTTCCAA__TT__GG______GG__CC
14._BE_10___
CCTTCCAA__TT__GG______GG__CC
15._BE_10___
CCTTCCAA__TT__GG______GG__CC
16._BE_10___
CCTTCCAA__TT__GG______GG__CC
17._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
18._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
19._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
20._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
21._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
22._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
23._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
24._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
25._JA_9_/37_[POU]___
CCTTCCAA__TT__GG______GG__CC
26._JA_9_/37_[POU]___
CCTTCCAA__TT__GG______GG__CC
27._JA_9_/37_[POU]___
CCTTCCAA__TT__GG______GG__CC
28._JA_9_/37_[POU]___
CCTTCCAA__TT__GG______GG__CC
29._AMAZ_5_/2___
CCTTCCAA__TT__GG______GG__CC
30._LCT_EEN_90_/S-7___
CCTTCCAA__TT__GG______GGCCCC
31._BE_10___
CCTTCCAA__TT__GG______GG__CC
32._BE_10___
CCTTCCAA__TT__GG______GG__CC
33._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
34._GU_207_/H___
CCTTCCAA__TT__GG______GG__CC
35._LCT_EEN_62_/S-4___
CCTTGGCCTTTTTTGGGGTTCCGGCCCC
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
AAAATTCCGGAATTTTCTTTCCGGAAX_X
1._MAR_1___
__AA__CC______TT____CCGGAAX_X
2._MAR_20___
__AA__CC______TT____CCGGAAX_X
3._GS_13___
__AATTCCGGAATTTTTTTTCCGGAAX_X
4._MAR_9___
__AATTCCGGAATTTTTTTTCCGGAAX_X
5._GDL_7___
AAAATTCCGGAATTTTTTTTCCGGAAX_X
6._GDL_3___
__AA__CCGG__TTTTTT____GGAAX_X
7._BE_10___
__GG__CC______TT____CCGGAAX_X
8._BE_10___
__GG__CC______TT____CCGGAAX_X
9._BE_10___
__GG__CC______TT____CCGGAAX_X
10._BE_10___
__GG__CC______TT____CCGGAAX_X
11._BE_10___
__GG__CC______TT____CCGGAAX_X
12._BE_10___
__GG__CC______TT____CCGGAAX_X
13._BE_10___
__GG__CC______TT____CCGGAAX_X
14._BE_10___
__GG__CC______TT____CCGGAAX_X
15._BE_10___
__GG__CC______TT____CCGGAAX_X
16._BE_10___
__GG__CC______TT____CCGGAAX_X
17._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
18._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
19._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
20._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
21._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
22._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
23._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
24._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
25._JA_9_/37_[POU]___
__GG__CC______TT____CCGGAAX_X
26._JA_9_/37_[POU]___
__GG__CC______TT____CCGGAAX_X
27._JA_9_/37_[POU]___
__GG__CC______TT____CCGGAAX_X
28._JA_9_/37_[POU]___
__GG__CC______TT____CCGGAAX_X
29._AMAZ_5_/2___
__GG__CC______TT____CCGGAAX_X
30._LCT_EEN_90_/S-7___
__GG__CC______TT____CCGGAAX_X
31._BE_10___
__GG__CC______TT____CCGGAAX_X
32._BE_10___
__GG__CC____________CCGGAAX_X
33._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
34._GU_207_/H___
__GG__CC______TT____CCGGAAX_X
35._LCT_EEN_62_/S-4___
__AATTCCGGAATTTTTTTTCCGGAAX_X

Input profile: DOM_30 RUQ_549

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAR_1

identical
21 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_20

identical
21 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

3._GS_13 RUQ_683

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._MAR_9 RUQ_557

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GDL_7 RUQ_554

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._GDL_3 RUQ_553

91.4 %
29 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

8._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

9._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

10._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

11._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

12._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

13._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

14._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

16._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

17._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 6 > FP
 Dapeng Zhang, 2016

18._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 12 > F
 Dapeng Zhang, 2016

19._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 1 > FP
 Dapeng Zhang, 2016

20._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 11
 Dapeng Zhang, 2016

21._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 10
 Dapeng Zhang, 2016

22._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 9
 Dapeng Zhang, 2016

23._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 7
 Dapeng Zhang, 2016

24._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 4
 Dapeng Zhang, 2016

25._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

26._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

27._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

28._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016

29._AMAZ_5_/2

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

30._LCT_EEN_90_/S-7

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 178 T1
 Dapeng Zhang, 2014

31._BE_10

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

32._BE_10

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

33._GU_207_/H

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 13
 Dapeng Zhang, 2016

34._GU_207_/H

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 2
 Dapeng Zhang, 2016

35._LCT_EEN_62_/S-4 RUQ_678

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP448 14TcSNP469 15TcSNP529
16TcSNP560 17TcSNP577 18TcSNP591 19TcSNP602 20TcSNP619
21TcSNP702 22TcSNP723 23TcSNP731 24TcSNP799 25TcSNP823
26TcSNP872 27TcSNP878 28TcSNP891 29TcSNP899 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484