SNP Profiles matching DOM 4

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
1._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
2._ICS_48___	__	__	CC	TT	CC	__	AA	CC	AG	CT	__	__	AA	__
3._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
4._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
5._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
6._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
7._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
8._ICS_48___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
9._LCT_EEN_62_/S-4___	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
10._GDL_3___	TT	CC	CC	TT	CC	GG	AA	CC	AA	__	GG	GG	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	CG	CC	TT	TT	TT	GT	GG	TT	CC	GG	CC
1._CERRO_AZUL_10___	AA	CC	TT	CG	CC	TT	TT	TT	GT	GG	TT	CC	GG	CC
2._ICS_48___	AA	CC	TT	CG	CC	__	TT	__	GT	__	__	__	GG	__
3._CERRO_AZUL_10___	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
4._CERRO_AZUL_10___	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
5._CERRO_AZUL_10___	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
6._CERRO_AZUL_10___	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
7._CERRO_AZUL_10___	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
8._ICS_48___	AA	CC	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG	CC
9._LCT_EEN_62_/S-4___	AA	CC	TT	GG	CC	TT	TT	TT	GG	GG	TT	CC	GG	CC
10._GDL_3___	__	CC	__	GG	AA	TT	TT	TT	GG	__	TT	__	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
1._CERRO_AZUL_10___	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
2._ICS_48___	CC	AA	__	CC	__	__	__	TT	__	__	CT	GG	AA	X_X
3._CERRO_AZUL_10___	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
4._CERRO_AZUL_10___	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
5._CERRO_AZUL_10___	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
6._CERRO_AZUL_10___	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
7._CERRO_AZUL_10___	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
8._ICS_48___	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA	X_X
9._LCT_EEN_62_/S-4___	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA	X_X
10._GDL_3___	CC	AA	__	CC	GG	__	TT	TT	TT	__	__	GG	AA	X_X

Input profile: DOM_4 RUQ_544

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._CERRO_AZUL_10 RUQ_936

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._ICS_48

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

3._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

5._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

6._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

7._CERRO_AZUL_10 GC-05-077-2-28

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._ICS_48 GC-05-078-2-29

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._LCT_EEN_62_/S-4 RUQ_678

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._GDL_3 RUQ_553

91.7 %
30 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484