SNP Profiles matching EQX /J [CHA]

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 Key

 1234567891011121314
_Input profile
CCCCAAGGTTGGCCCGAGCTAAGGTTCC
1._RUQ_107
____AAGGTT__CCCGAGCT____TT__
2._LCT_EEN_108
____AAGGTT__CC__AGCC____TT__
3._LCT_EEN_68_/S-1
____ACGGTT__CC__AGCC____TT__
4._LCT_EEN_85
____AAGGTT__CC____CC____TT__
5._LCT_EEN_108_/S
____AAGGTT__CC__GGCC____TT__
6._LCT_EEN_162_/B
____AAGGTT__CC__AACC____TT__
7._LCT_EEN_201
____CCGGTT__CC__AGCT____AT__
8._LCT_EEN_32
____AAGGTT__CC__AGCC____TT__
9._LCT_EEN_218
____AAGGTT__CC__GGCC____TT__
10._LCT_EEN_280
____ACGGTT__CC__AGCC____TT__
11._LCT_EEN_221
____AAGGTT__CC__GGCC____TT__
 1516171819202122232425262728
_Input profile
GGAACCGGGGCCCCCTCCGGAGTTCCCC
1._RUQ_107
GGAACCGGGGCC__CT__GG______CC
2._LCT_EEN_108
GGAACCGGGGCC__TT__GG______CC
3._LCT_EEN_68_/S-1
GGAACCGGGGCC__TT__GG______CC
4._LCT_EEN_85
GGAACCGGGGCC__CT__GG______CG
5._LCT_EEN_108_/S
GGACCCGGGGCC__CT__GG______CC
6._LCT_EEN_162_/B
GGAACCGGGGCC__TT__GG______CC
7._LCT_EEN_201
GGAACCGGGGCC__CT__GG______CC
8._LCT_EEN_32
GGAACCGGGGCC__CT__TT______CC
9._LCT_EEN_218
GGAACCGGGGCC__TT__GG______CC
10._LCT_EEN_280
GGAACCGGGGCC__CT__GG______CG
11._LCT_EEN_221
GGAACCGGGGCC__TT__GG______CC
 2930313233343536373839404142
_Input profile
GGTTAACCCCGGGGTTGTTTCCTTCCGG
1._RUQ_107
__CTAA__CC______GT____TTCCGG
2._LCT_EEN_108
GGTTAA__CC______GG____TTCCGG
3._LCT_EEN_68_/S-1
GGTTAA__CC______GT____TTCCGG
4._LCT_EEN_85
GGTTAA__CC______GG____TTCCGG
5._LCT_EEN_108_/S
GGTTAA__CC______GG____TTCCGG
6._LCT_EEN_162_/B
GGTTAA__CC______GG____TTCCGG
7._LCT_EEN_201
GGTTAA__CC______GG____TTCCGG
8._LCT_EEN_32
GGTTAA__CC______GG____TTCCGG
9._LCT_EEN_218
GGTTAA__CC______GG____TTCC__
10._LCT_EEN_280
__TTAA__CC______GG____TTCCGG
11._LCT_EEN_221
__TTAA__CC______GG____TTCC__

Input profile: EQX_/J_[CHA] RUQ_107

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EQX_/J_[CHA] RUQ_107

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_108

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 X16 Y3
 Dapeng Zhang, 2014

3._LCT_EEN_68_/S-1

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D310 T3
 Dapeng Zhang, 2014

4._LCT_EEN_85

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D254 T3
 Dapeng Zhang, 2014

5._LCT_EEN_108_/S

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D336 T1
 Dapeng Zhang, 2014

6._LCT_EEN_162_/B

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B C215 T3
 Dapeng Zhang, 2014

7._LCT_EEN_201

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 176 T1
 Dapeng Zhang, 2014

8._LCT_EEN_32

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

9._LCT_EEN_218

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

10._LCT_EEN_280

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A144 T1
 Dapeng Zhang, 2016

11._LCT_EEN_221

90.9 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484