SNP Profiles matching BE 8

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCTTCCGGAACCAAGGGGAACCTT
1._MAR_1___
____CCTTCC__AA__AA____AACCTT
2._MAR_20___
____CCTTCC__AA__AA____AACCTT
3._LCT_EEN_62_/S-4___
TTCCCCTTCCGGAACCAAGGGGAACCTT
4._MAR_9___
TTCCCCTTCCGGAACCAAGGGGAACCTT
5._GS_13___
TTCCCCTTCCAGAACCAAGGGGAACC__
6._B_12_/2_[POU]___
TTCCCCTTCCGGAACCAAGGGGAACCTT
7._GDL_7___
TTCCCCTTCCGGAACCAAGGGGAACCTT
8._SC_9_[UNK]___
TTCCCCTTCCGGAACCAAGGGGAACC__
9._PH_9_[BRA]___
TTCCCCTTCCGGAACCAAGGGGAACCTT
10._CERRO_AZUL_10___
TTCCCCTTCCGGAACCAGGGGGAACC__
11._DOM_4___
TTCCCCTTCCGGAACCAGGGGGAACC__
12._DOM_30___
TTACCCTTCCAGAACCAAGGGG__CC__
13._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
14._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
15._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
16._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
17._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
18._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
19._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
20._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
21._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
22._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
23._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
24._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
25._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
26._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
27._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
28._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
29._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
30._GU_207___
TTCCCCTTCCGGAACCAAGGGGAACCTT
31._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAAGGGGAACCTT
32._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAAGGGGAACCTT
33._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAAGGGGAACCTT
34._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAAGGGGAACCTT
35._GF_32___
TTCCAATTCCGGAACCAAGGGGAACCTT
36._BE_10___
TTCCCCTTCCGGAACCAAGGGGAACCTT
37._BE_10___
TTCCCCTT__GGAACCAAGGGGAACCTT
38._GU_207___
TTCCCCTTCCGG__CCAAGGGGAACCTT
39._GU_207___
TTCC__TTCCGGAACCAAGGGGAACCTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAATTTTTTGGTTCCCCAACCGGTTTT
1._MAR_1___
GGAA__TT______CCCCAACC____TT
2._MAR_20___
GGAA__TT______CCCCAACC____TT
3._LCT_EEN_62_/S-4___
GGCCTTTTTTGGTTCCCCAACCGGTTTT
4._MAR_9___
GGAACCTTTTGGTTCCCCAACCGGTTTT
5._GS_13___
GGAACCTTTTGGTTCCCCAACCGGTTTT
6._B_12_/2_[POU]___
CCAATTTTTTGGTTCCCCGGCCGGTTTT
7._GDL_7___
GGAACCCCTTGGTTCCCCAACCGGTTTT
8._SC_9_[UNK]___
CCAATTTTTTGGTTCCCCGGCCGGTTTT
9._PH_9_[BRA]___
CGAATTTTCCGGTTCCCCGGCCGGTTTT
10._CERRO_AZUL_10___
CGCCTTTTTTGTTTCCCCAACCGGTTTT
11._DOM_4___
CGCCTTTTTTGTTTCCCCAACCGGTTTT
12._DOM_30___
GGAACCTTTTGGTTCCCCAACCGGTTTT
13._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
14._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
15._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
16._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
17._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
18._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
19._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
20._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
21._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
22._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
23._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
24._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
25._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
26._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
27._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
28._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
29._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
30._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
31._JA_9_/37_[POU]___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
32._JA_9_/37_[POU]___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
33._JA_9_/37_[POU]___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
34._JA_9_/37_[POU]___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
35._GF_32___
GGAACCCCTTGGTTCCCCAACCGGTTTT
36._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTT__
37._BE_10___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
38._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
39._GU_207___
CCAATTTTCCGGTTCCCCGGCCGGTTTT
 29 30 31            
_Input profile
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._MAR_1___
__GGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._MAR_20___
__GGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._LCT_EEN_62_/S-4___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._MAR_9___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GS_13___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._B_12_/2_[POU]___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GDL_7___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._SC_9_[UNK]___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PH_9_[BRA]___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._CERRO_AZUL_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._DOM_4___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._DOM_30___
CTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._JA_9_/37_[POU]___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._JA_9_/37_[POU]___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._JA_9_/37_[POU]___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._JA_9_/37_[POU]___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._GF_32___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
37._BE_10___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
38._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
39._GU_207___
TTGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GDL_3 RUQ_553

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAR_1

identical
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_20

identical
18 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

3._LCT_EEN_62_/S-4 RUQ_678

96.8 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._MAR_9 RUQ_557

96.8 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GS_13 RUQ_683

95 %
30 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._B_12_/2_[POU] RUQ_436

93.5 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._GDL_7 RUQ_554

93.5 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._SC_9_[UNK] RUQ_44

93.3 %
30 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PH_9_[BRA] GC-08-110-3-09

91.9 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._CERRO_AZUL_10 RUQ_936

91.7 %
30 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._DOM_4 RUQ_544

91.7 %
30 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._DOM_30 RUQ_549

91.4 %
29 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

15._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

22._BE_10 GC-08-090-2-13

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

23._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

26._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

28._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_207 GC-01-056-3-11

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

31._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

32._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

33._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

34._JA_9_/37_[POU] GC-08-071-1-93

90.3 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._GF_32 RUQ_648

90.3 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

36._BE_10 GC-08-090-2-13

90 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

37._BE_10 GC-08-090-2-13

90 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

38._GU_207 GC-01-056-3-11

90 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

39._GU_207 GC-01-056-3-11

90 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP529 14TcSNP534 15TcSNP577
16TcSNP591 17TcSNP602 18TcSNP619 19TcSNP702 20TcSNP723
21TcSNP799 22TcSNP878 23TcSNP891 24TcSNP998 25TcSNP1060
26TcSNP1063 27TcSNP1126 28TcSNP1253 29TcSNP1309 30TcSNP1458
31TcSNP1484