SNP Profiles matching LCT EEN 108

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 Key

 1234567891011121314
_Input profile
GGAAAAGGTTCCAGCCTTAGGGAACCGG
1._RUQ_185
__AAGGTTCCAGCCTT_GGACCCGG
2._RUQ_102
__ACGGTTCCGGCCTT_GGAACCGG
3._RUQ_107
__AAGGTTCCAGCTTT_GGAACCGG
4._RUQ_687
__AAGGTTCCGGCCTT_GGCCCCGG
5._GC-08-269-8-41
_AAAAGGTTCCAGCC_AAGGACCCGG
6._LCT_EEN_241
_AAAAGGTTCCAGCC_AAGGACCCGG
7._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
8._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
9._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
10._LCT_EEN_231
GGAAAAGGTTCCGGCCTTAGGGAACCGG
11._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
12._LCT_EEN_218
GGAAAAGGTTCCGGCCTTAAGGAACCGG
13._RUQ_1548
__AAGGTTCCGGCCTT_GGACCCGG
14._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
15._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
16._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
17._LCT_EEN_221
GGAAAAGGTTCCGGCCTTAAGGAACCGG
18._LCT_EEN_378
GGAAAAGGTTCCGGCCTTAAGGACCCGG
19._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
20._LCT_EEN_108_/S
GGAAAAGGTTCCGGCCTTGGGGACCCGG
21._LCT_EEN_251
GGAACCGGTTCCGGCTTTAGGGAACCGG
22._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
23._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
24._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
25._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
26._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
27._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
28._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
29._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
30._LCT_EEN_217
GGAAAAGGTTCCGGCCTTAAGGAACCGG
 1516171819202122232425262728
_Input profile
GGCCTTAAGGCCCCGGTTTTCGTTCTAA
1._RUQ_185
GGCCTT_GG_CGGGTT____AA
2._RUQ_102
GGCCTT_GT_CCGGTT____AA
3._RUQ_107
GGCCCT_GG_CCGGTT____AA
4._RUQ_687
GGCCTT_GG_CCGGTT____AA
5._GC-08-269-8-41
GGCCTTAGGGCCCGGGTT_CGATCTAA
6._LCT_EEN_241
GGCCTTAGGG_CG_TT_CGATCTAA
7._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
8._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
9._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
10._LCT_EEN_231
GGCCTTAAGGCCCC-TTTTCCAACTAA
11._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
12._LCT_EEN_218
GGCCTTAAGGCCCCGGTTTTCCAATTAA
13._RUQ_1548
-CCTT_GG_CCCGTT____AA
14._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
15._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
16._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
17._LCT_EEN_221
GGCCTTAAGGCCCC-TTTTCCAACCAA
18._LCT_EEN_378
GGCCTTAAGGCCCC-TTTTCGATTTAA
19._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
20._LCT_EEN_108_/S
GGCCCTAGGGCCCCGGTTTTGGTTCTAA
21._LCT_EEN_251
GGCCTTAAGGCCCCGGTTTTCGATCTAA
22._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
23._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
24._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
25._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
26._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
27._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
28._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
29._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
30._LCT_EEN_217
CGCCTTAAGGCCCC-TTTTCCAACTAA
 293031323334353637     
_Input profile
CCGGATTTGGAATTCCGGX_XX_XX_XX_XX_X
1._RUQ_185
CC___GG_TTCCGGX_XX_XX_XX_XX_X
2._RUQ_102
CC___GG_TTCCGGX_XX_XX_XX_XX_X
3._RUQ_107
CC___GT_TTCCGGX_XX_XX_XX_XX_X
4._RUQ_687
CC___GG_TTCCGGX_XX_XX_XX_XX_X
5._GC-08-269-8-41
CCGG_TTGGAATTCCGGX_XX_XX_XX_XX_X
6._LCT_EEN_241
CCGG_TTGGAATTCCGGX_XX_XX_XX_XX_X
7._GC-08-269-8-41
CCGGATTTGGAATTCCGGX_XX_XX_XX_XX_X
8._GC-08-269-8-41
CCGGATTTGGAATTCCGGX_XX_XX_XX_XX_X
9._GC-08-269-8-41
CCGGATTTGGAATTCCGGX_XX_XX_XX_XX_X
10._LCT_EEN_231
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
11._GC-08-269-8-41
CCGGATTT_AATTCCGGX_XX_XX_XX_XX_X
12._LCT_EEN_218
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
13._RUQ_1548
CC___GG_CTCCGGX_XX_XX_XX_XX_X
14._LCT_EEN_241
CCGGATTTGGAATTCCGGX_XX_XX_XX_XX_X
15._LCT_EEN_241
CCGGATTTGGAATTCCGGX_XX_XX_XX_XX_X
16._LCT_EEN_241
CCGGATTTGGAATTCCGGX_XX_XX_XX_XX_X
17._LCT_EEN_221
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
18._LCT_EEN_378
CCGG-TTGGACTTCC-X_XX_XX_XX_XX_X
19._LCT_EEN_241
CCGGATTT_AATTCCGGX_XX_XX_XX_XX_X
20._LCT_EEN_108_/S
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
21._LCT_EEN_251
CCGGAATTGGACTTCCGGX_XX_XX_XX_XX_X
22._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
23._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
24._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
25._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
26._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
27._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
28._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
29._GC-08-070-1-92
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
30._LCT_EEN_217
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X

Input profile: LCT_EEN_108

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 X16 Y3
 Dapeng Zhang, 2014

1._LCT_EEN_241 RUQ_185

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._COCA_3308_/1_[CHA] RUQ_102

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._EQX_/J_[CHA] RUQ_107

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_302 RUQ_687

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._LCT_EEN_241 GC-08-269-8-41

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._LCT_EEN_241

91.9 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 2
 Dapeng Zhang, 2016

7._LCT_EEN_241 GC-08-269-8-41

91.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._LCT_EEN_241 GC-08-269-8-41

91.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._LCT_EEN_241 GC-08-269-8-41

91.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._LCT_EEN_231

91.7 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

11._LCT_EEN_241 GC-08-269-8-41

91.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._LCT_EEN_218

91.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

13._LCT_EEN_341_/S-2 RUQ_1548

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._LCT_EEN_241

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 6
 Dapeng Zhang, 2016

15._LCT_EEN_241

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 4
 Dapeng Zhang, 2016

16._LCT_EEN_241

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._LCT_EEN_221

91.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

18._LCT_EEN_378

91.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

19._LCT_EEN_241

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 3
 Dapeng Zhang, 2016

20._LCT_EEN_108_/S

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D336 T1
 Dapeng Zhang, 2014

21._LCT_EEN_251

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 177 T1
 Dapeng Zhang, 2014

22._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

24._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

26._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

28._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._LCT_EEN_217

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1350 35TcSNP1442
36TcSNP1458 37TcSNP1484