SNP Profiles matching LCT EEN 108/S

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AA	GG	TT	CC	GG	CC	TT	GG	GG	AC	CC	GG
1._RUQ_687	__	__	AA	GG	TT	CC	GG	CC	TT	__	GG	CC	CC	GG
2._RUQ_185	__	__	AA	GG	TT	CC	AG	CC	TT	__	GG	AC	CC	GG
3._RUQ_1548	__	__	AA	GG	TT	CC	GG	CC	TT	__	GG	AC	CC	GG
4._RUQ_1559	__	__	AC	GG	TT	CC	GG	CC	TT	__	GG	CC	CC	GG
5._RUQ_102	__	__	AC	GG	TT	CC	GG	CC	TT	__	GG	AA	CC	GG
6._RUQ_107	__	__	AA	GG	TT	CC	AG	CT	TT	__	GG	AA	CC	GG
7._LCT_EEN_108	GG	AA	AA	GG	TT	CC	AG	CC	TT	AG	GG	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CT	AG	GG	CC	CC	GG	TT	TT	GG	TT	CT	AA
1._RUQ_687	GG	CC	TT	__	GG	__	CC	GG	TT	__	__	__	__	AA
2._RUQ_185	GG	CC	TT	__	GG	__	CG	GG	TT	__	__	__	__	AA
3._RUQ_1548	__	CC	TT	__	GG	__	CC	CG	TT	__	__	__	__	AA
4._RUQ_1559	GG	CC	TT	__	GG	__	CC	GG	TT	__	__	__	__	AA
5._RUQ_102	GG	CC	TT	__	GT	__	CC	GG	TT	__	__	__	__	AA
6._RUQ_107	GG	CC	CT	__	GG	__	CC	GG	TT	__	__	__	__	AA
7._LCT_EEN_108	GG	CC	TT	AA	GG	CC	CC	GG	TT	TT	CG	TT	CT	AA

	29	30	31	32	33	34	35	36	37
_Input profile	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
1._RUQ_687	CC	__	__	__	GG	__	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
2._RUQ_185	CC	__	__	__	GG	__	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
3._RUQ_1548	CC	__	__	__	GG	__	CT	CC	GG	X_X	X_X	X_X	X_X	X_X
4._RUQ_1559	CC	__	__	__	GG	__	CT	CC	GG	X_X	X_X	X_X	X_X	X_X
5._RUQ_102	CC	__	__	__	GG	__	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
6._RUQ_107	CC	__	__	__	GT	__	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
7._LCT_EEN_108	CC	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_108_/S

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D336 T1

Dapeng Zhang, 2014

1._LCT_EEN_302 RUQ_687

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LCT_EEN_241 RUQ_185

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LCT_EEN_341_/S-2 RUQ_1548

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._AGU_31_[CHA] RUQ_1559

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._COCA_3308_/1_[CHA] RUQ_102

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._EQX_/J_[CHA] RUQ_107

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._LCT_EEN_108

90.5 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X16 Y3

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1165	33	TcSNP1253	34	TcSNP1350	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484