SNP Profiles matching LCT EEN 124

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 Key

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_Input profile
CGAAAAGGTTCCAGCTTTAAGGCCCCGG
1._RUQ_1548
____AAGGTTCCGGCCTT__GGACCCGG
2._LCT_EEN_123
CGAAAAGGTTCCGGTTTTAAGGCCCCGG
3._LCT_EEN_141
GGAAAAGGTTCCGGCCTTAAGGACCCGG
4._LCT_EEN_220
GGAAAAGGTTCCGGCCTTAAGGAACCGG
5._LCT_EEN_227
CGAAAAGGTTCCGGCCTTAGGGAACCGG
6._LCT_EEN_255
CCAAACGGTTCCAGCCTTAAGGCCCCGG
7._LCT_EEN_30
GGAAACGGTTCCAGCCTTAAGGCCCCGG
8._LCT_EEN_38
GGAAAAGGTTCCGGCCTTAAGGACCCGG
9._LCT_EEN_94
CCAAAAGGTTCCGGCTTTAGGGCCCCGG
10._LCT_EEN_219
CGAAAAGGTTCCGGCCTTAAGGACCCGG
11._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
12._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
13._LCT_EEN_300
CCAAAAGGTTCCGGCTTTAGGGCCCCGG
 1516171819202122232425262728
_Input profile
CGCCTTAGGGCCCCCGTTTTCCAATTAA
1._RUQ_1548
__CCTT__GG__CCCGTT________AA
2._LCT_EEN_123
CGCCTTAAGTCCCCCCTTTTCCAATTAA
3._LCT_EEN_141
GGCCTTAAGGCCCCCCTTTTCCAATTAA
4._LCT_EEN_220
GGCCTTAAGGCCCCCGTTTTCCAATTAA
5._LCT_EEN_227
GGCCTTAGGGCCCCCCTTTTCCAATTAA
6._LCT_EEN_255
GGCCCTAGGGCCCCCGTTTTCGAATTAA
7._LCT_EEN_30
GGCCTTAAGGCCCCGGTTTTCCAATTAA
8._LCT_EEN_38
GGCCTTAAGGCCCCCCTTTTCCAATTAA
9._LCT_EEN_94
GGCCTTGGGGCCCCGGTTTTCCAATTAA
10._LCT_EEN_219
GGCCTTAAGTCCCC__TTTTCCAATTAA
11._LCT_EEN_282
GGCCTTAAGGCCCC__TTTTCCAATTAA
12._LCT_EEN_282
GGCCTTAAGGCCCC__TTTTCCAATTAA
13._LCT_EEN_300
GGCCTTGGGGCCCCGGTTTTCCAATTAA
 293031323334353637     
_Input profile
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
1._RUQ_1548
CC______GG__CTCCGGX_XX_XX_XX_XX_X
2._LCT_EEN_123
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
3._LCT_EEN_141
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
4._LCT_EEN_220
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
5._LCT_EEN_227
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
6._LCT_EEN_255
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
7._LCT_EEN_30
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
8._LCT_EEN_38
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
9._LCT_EEN_94
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
10._LCT_EEN_219
CCGGAATTGGAACCCCGGX_XX_XX_XX_XX_X
11._LCT_EEN_282
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
12._LCT_EEN_282
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
13._LCT_EEN_300
CCGG__TTGGAATTCC__X_XX_XX_XX_XX_X

Input profile: LCT_EEN_124

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

1._LCT_EEN_341_/S-2 RUQ_1548

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_123

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

3._LCT_EEN_141

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

4._LCT_EEN_220

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

5._LCT_EEN_227

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

6._LCT_EEN_255

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

7._LCT_EEN_30

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

8._LCT_EEN_38

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

9._LCT_EEN_94

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

10._LCT_EEN_219

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

11._LCT_EEN_282

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

12._LCT_EEN_282

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

13._LCT_EEN_300

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1350 35TcSNP1442
36TcSNP1458 37TcSNP1484