SNP Profiles matching LCT EEN 162 /B

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 Key

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_Input profile
CCAAAAGGTTCCAACCTTGGGGAACCGG
1._RUQ_185
____AAGGTTCCAGCCTT__GGACCCGG
2._LCT_EEN_72
CCAAAAGGTTCCAACCTTAGGGACCCGG
3._RUQ_102
____ACGGTTCCGGCCTT__GGAACCGG
4._RUQ_107
____AAGGTTCCAGCTTT__GGAACCGG
5._RUQ_687
____AAGGTTCCGGCCTT__GGCCCCGG
6._RUQ_442
____CCGGTTCCAACCTT__GGAACCGG
 1516171819202122232425262728
_Input profile
GGCCTTGGGGCCCCGGTTTTGGATTTAA
1._RUQ_185
GGCCTT__GG__CGGGTT________AA
2._LCT_EEN_72
GGCCTTGGGGCCCCGGTTCTGGTTTTAA
3._RUQ_102
GGCCTT__GT__CCGGTT________AA
4._RUQ_107
GGCCCT__GG__CCGGTT________AA
5._RUQ_687
GGCCTT__GG__CCGGTT________AA
6._RUQ_442
GGCCTT__GT__CCGGTT________AA
 293031323334353637383940  
_Input profile
CCGGTTTTGGTTAACCTTCCGGCCX_XX_X
1._RUQ_185
CC______GG______TTCCGG__X_XX_X
2._LCT_EEN_72
CCGGTTTTGG__AA__CTCCGG__X_XX_X
3._RUQ_102
CC______GG______TTCCGG__X_XX_X
4._RUQ_107
CC______GT______TTCCGG__X_XX_X
5._RUQ_687
CC______GG______TTCCGG__X_XX_X
6._RUQ_442
CC______GT______TTCCGG__X_XX_X

Input profile: LCT_EEN_162_/B

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B C215 T3
 Dapeng Zhang, 2014

1._LCT_EEN_241 RUQ_185

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_72

93.2 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D239 T1
 Dapeng Zhang, 2014

3._COCA_3308_/1_[CHA] RUQ_102

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._EQX_/J_[CHA] RUQ_107

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._LCT_EEN_302 RUQ_687

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._LCT_EEN_68 RUQ_442

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520