SNP Profiles matching LCT EEN 201

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 Key

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_Input profile
GGAACCGGTTCCAGCTATGGGGAACCGG
1._RUQ_107
____AAGGTTCCAGCTTT__GGAACCGG
2._LCT_EEN_251
GGAACCGGTTCCGGCTTTAGGGAACCGG
 1516171819202122232425262728
_Input profile
GGCCCTAGGGCCCCGGTTTTCGAACTAA
1._RUQ_107
GGCCCT__GG__CCGGTT________AA
2._LCT_EEN_251
GGCCTTAAGGCCCCGGTTTTCGATCTAA
 293031323334353637     
_Input profile
CCGGATTTGGACTTCCGGX_XX_XX_XX_XX_X
1._RUQ_107
CC______GT__TTCCGGX_XX_XX_XX_XX_X
2._LCT_EEN_251
CCGGAATTGGACTTCCGGX_XX_XX_XX_XX_X

Input profile: LCT_EEN_201

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 176 T1
 Dapeng Zhang, 2014

1._EQX_/J_[CHA] RUQ_107

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_251

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 177 T1
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1350 35TcSNP1442
36TcSNP1458 37TcSNP1484