SNP Profiles matching LCT EEN 227

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 Key

 1234567891011121314
_Input profile
CGAAAAGGTTCCGGCCTTAGGGAACCGG
1._RUQ_1547
____ACGGTTCCGGCCTT__GGAACCGG
2._LCT_EEN_231
GGAAAAGGTTCCGGCCTTAGGGAACCGG
3._RUQ_1548
____AAGGTTCCGGCCTT__GGACCCGG
4._LCT_EEN_220
GGAAAAGGTTCCGGCCTTAAGGAACCGG
5._LCT_EEN_223
GGAAAAGGTTCCGGCCTTAAGGAACCGG
6._LCT_EEN_142
GGAAAAGGTTCCGGCCTTAAGGAACCGG
7._LCT_EEN_141
GGAAAAGGTTCCGGCCTTAAGGACCCGG
8._LCT_EEN_38
GGAAAAGGTTCCGGCCTTAAGGACCCGG
9._RUQ_1600
____AAGGTTCCGGCCTT__GGAACCGG
10._RUQ_178
____AAGGTTCCGGCCTT__GGAACCGG
11._LCT_EEN_219
CGAAAAGGTTCCGGCCTTAAGGACCCGG
12._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
13._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
14._LCT_EEN_52
GGAAAAGGTTCCGGCCTTAAGGAACCGG
15._LCT_EEN_327
GGAAAAGGTTCCGGCCTTAAGGACCCGG
16._LCT_EEN_146
GGAAAAGGTTCCGGCCTTAAGGACCCGG
17._LCT_EEN_217
GGAAAAGGTTCCGGCCTTAAGGAACCGG
18._LCT_EEN_234
GGAAAA__TTCCGGCCTT____CCCCGG
19._LCT_EEN_218
GGAAAAGGTTCCGGCCTTAAGGAACCGG
20._LCT_EEN_44_/S-9
GGAAAAGGTTCCGGCCTTAAGGAACCGG
21._LCT_EEN_65
GGAAAAGGTTCCGGCCTTAAGGACCCGG
22._LCT_EEN_221
GGAAAAGGTTCCGGCCTTAAGGAACCGG
23._LCT_EEN_232
GGAAAAGGTTCCGGCCTTAAGGACCCGG
24._LCT_EEN_283
GGAAAAGGTTCCGGCCTTAAGGACCCGG
25._LCT_EEN_109_/S-102
GGAAAAGGTTCCGGCCTTAAGGAACCGG
26._LCT_EEN_124
CGAAAAGGTTCCAGCTTTAAGGCCCCGG
27._LCT_EEN_376
GGAACCGGTTCCGGCCTTAAGGAACCGG
28._LCT_EEN_379
GGAACCGGTTCCGGCCTTAAGGAACCGG
29._LCT_EEN_49
GGAAACGGTTCCGGCCTTAAGGAACCGG
 1516171819202122232425262728
_Input profile
GGCCTTAGGGCCCCCCTTTTCCAATTAA
1._RUQ_1547
GGCCTT__GG__CCCCTT________AA
2._LCT_EEN_231
GGCCTTAAGGCCCC__TTTTCCAACTAA
3._RUQ_1548
__CCTT__GG__CCCGTT________AA
4._LCT_EEN_220
GGCCTTAAGGCCCCCGTTTTCCAATTAA
5._LCT_EEN_223
GGCCTTAGGGCCCCCCTTTTCCAACTAA
6._LCT_EEN_142
GGCCTTAAGTCCCC__TTTTCCAATTAA
7._LCT_EEN_141
GGCCTTAAGGCCCCCCTTTTCCAATTAA
8._LCT_EEN_38
GGCCTTAAGGCCCCCCTTTTCCAATTAA
9._RUQ_1600
GGCCTT__TT__CCCCTT________AA
10._RUQ_178
GGCCTT__TT__CCCCTT________AA
11._LCT_EEN_219
GGCCTTAAGTCCCC__TTTTCCAATTAA
12._LCT_EEN_282
GGCCTTAAGGCCCC__TTTTCCAATTAA
13._LCT_EEN_282
GGCCTTAAGGCCCC__TTTTCCAATTAA
14._LCT_EEN_52
GGCCTTAAGTCCCCCCTTTTCCAATTAA
15._LCT_EEN_327
GGCCTTAAGGCCCC__TTTTCCAATTAA
16._LCT_EEN_146
GGCCTTAAGGCCCCCCTTTTCCATTTAA
17._LCT_EEN_217
CGCCTTAAGGCCCC__TTTTCCAACTAA
18._LCT_EEN_234
GGCCTTAAGGCC____TTTTCCAATTAA
19._LCT_EEN_218
GGCCTTAAGGCCCCGGTTTTCCAATTAA
20._LCT_EEN_44_/S-9
GGCCTTAAGTCCCCCGTTTTCCAATTAA
21._LCT_EEN_65
GGCCTTAAGTCCCCCCTTTTCCAATTAA
22._LCT_EEN_221
GGCCTTAAGGCCCC__TTTTCCAACCAA
23._LCT_EEN_232
GGCCTTGGTTCCCCCCTTTTCCAATTAA
24._LCT_EEN_283
GGCCTTAAGTCCCCCCTTTTCCAACTAA
25._LCT_EEN_109_/S-102
CGCCTTAAGTCCCCCCTTTTCGAATTAA
26._LCT_EEN_124
CGCCTTAGGGCCCCCGTTTTCCAATTAA
27._LCT_EEN_376
GGCCTTAAGGCCCCCCTTTTCGAATTAA
28._LCT_EEN_379
GGCCTTAAGGCCCCCCTTTTCGAATTAA
29._LCT_EEN_49
GGCCTTAAGTCCCCCCTTTTCCAACTAA
 2930313233343536373839   
_Input profile
CCGGAATTGGTTAATTCTCCGGX_XX_XX_X
1._RUQ_1547
CC______GG______CTCCGGX_XX_XX_X
2._LCT_EEN_231
CCGGAATTGGTTAATTCTCCGGX_XX_XX_X
3._RUQ_1548
CC______GG______CTCCGGX_XX_XX_X
4._LCT_EEN_220
CCGGAATTGGTTAATTCTCCGGX_XX_XX_X
5._LCT_EEN_223
CCGGAATTGGTTAATTTTCCGGX_XX_XX_X
6._LCT_EEN_142
CCGGAATTGGTTAATTCTCCGGX_XX_XX_X
7._LCT_EEN_141
CCGGAATTGG__AA__CTCCGGX_XX_XX_X
8._LCT_EEN_38
CCGGAATTGG__AA__CTCCGGX_XX_XX_X
9._RUQ_1600
CC______GG______TTCCGGX_XX_XX_X
10._RUQ_178
CC______GG______TTCCGGX_XX_XX_X
11._LCT_EEN_219
CCGGAATTGGTTAATTCCCCGGX_XX_XX_X
12._LCT_EEN_282
CCGGAATTGGTTAATTTTCCGGX_XX_XX_X
13._LCT_EEN_282
CCGGAATTGGTTAATTTTCCGGX_XX_XX_X
14._LCT_EEN_52
CCGGAATTGG__AA__TTCCGGX_XX_XX_X
15._LCT_EEN_327
CCGG__TTGGTTAATTTTCC__X_XX_XX_X
16._LCT_EEN_146
CCGGAATTGGTTAATTTTCCGGX_XX_XX_X
17._LCT_EEN_217
CCGGAATTGGTTAATTTTCCGGX_XX_XX_X
18._LCT_EEN_234
CCGG__TTGGTT__TTTTCC__X_XX_XX_X
19._LCT_EEN_218
CCGG__TTGGTTAATTTTCC__X_XX_XX_X
20._LCT_EEN_44_/S-9
CCGGAATTGG__AA__TTCCGGX_XX_XX_X
21._LCT_EEN_65
CCGGAATTGG__AA__TTCCGGX_XX_XX_X
22._LCT_EEN_221
CCGG__TTGGTTAATTTTCC__X_XX_XX_X
23._LCT_EEN_232
CCGGAATTGGTTAATTTTCCGGX_XX_XX_X
24._LCT_EEN_283
CCGGAATTGGTTAATTTTCCGGX_XX_XX_X
25._LCT_EEN_109_/S-102
CCGGAATTGG__AA__TTCCGGX_XX_XX_X
26._LCT_EEN_124
CCGGAATTGG__AA__CTCCGGX_XX_XX_X
27._LCT_EEN_376
CCGG__TTGGTTAATTTTCC__X_XX_XX_X
28._LCT_EEN_379
CCGG__TTGGTTAATTTTCC__X_XX_XX_X
29._LCT_EEN_49
CCGGAATTGG__AA__TTCCGGX_XX_XX_X

Input profile: LCT_EEN_227

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

1._NAPO_25_[CHA] RUQ_1547

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_231

96.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

3._LCT_EEN_341_/S-2 RUQ_1548

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_220

94.9 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

5._LCT_EEN_223

94.9 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

6._LCT_EEN_142

94.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

7._LCT_EEN_141

94.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

8._LCT_EEN_38

94.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

9._AMAZ_11 RUQ_1600

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._LCT_EEN_163_/A RUQ_178

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._LCT_EEN_219

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

12._LCT_EEN_282

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

13._LCT_EEN_282

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

14._LCT_EEN_52

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

15._LCT_EEN_327

93.1 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 61 T1
 Dapeng Zhang, 2014

16._LCT_EEN_146

92.3 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

17._LCT_EEN_217

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

18._LCT_EEN_234

91.9 %
31 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

19._LCT_EEN_218

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

20._LCT_EEN_44_/S-9

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 146 T2
 Dapeng Zhang, 2014

21._LCT_EEN_65

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

22._LCT_EEN_221

91.7 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

23._LCT_EEN_232

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

24._LCT_EEN_283

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 18 T1
 Dapeng Zhang, 2014

25._LCT_EEN_109_/S-102

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 137 T1
 Dapeng Zhang, 2014

26._LCT_EEN_124

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

27._LCT_EEN_376

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

28._LCT_EEN_379

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

29._LCT_EEN_49

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484