SNP Profiles matching LCT EEN 251

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	CC	GG	TT	CC	GG	CT	TT	AG	GG	AA	CC	GG
1._RUQ_102	_	_	AC	GG	TT	CC	GG	CC	TT	_	GG	AA	CC	GG
2._LCT_EEN_250	GG	AA	AC	GG	TT	CC	GG	CC	TT	AG	GG	CC	CC	GG
3._LCT_EEN_108	GG	AA	AA	GG	TT	CC	AG	CC	TT	AG	GG	AA	CC	GG
4._LCT_EEN_201	GG	AA	CC	GG	TT	CC	AG	CT	AT	GG	GG	AA	CC	GG
5._LCT_EEN_37	GG	AA	AC	GG	TT	CC	GG	CC	TT	AA	GG	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	TT	AA	GG	CC	CC	GG	TT	TT	CG	AT	CT	AA
1._RUQ_102	GG	CC	TT	_	GT	_	CC	GG	TT	_	_	_	_	AA
2._LCT_EEN_250	GG	CC	TT	AA	GG	CC	CC	CC	TT	TT	CC	AT	CT	AA
3._LCT_EEN_108	GG	CC	TT	AA	GG	CC	CC	GG	TT	TT	CG	TT	CT	AA
4._LCT_EEN_201	GG	CC	CT	AG	GG	CC	CC	GG	TT	TT	CG	AA	CT	AA
5._LCT_EEN_37	GG	CC	TT	AA	GT	CC	CC	GG	TT	TT	CG	AA	TT	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	CC	GG	AA	TT	GG	CT	AC	CT	TT	CC	GG	CC	X_X	X_X
1._RUQ_102	CC	_	_	_	GG	_	_	_	TT	CC	GG	_	X_X	X_X
2._LCT_EEN_250	CC	GG	AA	TT	GG	CT	AC	CT	TT	CC	GG	CC	X_X	X_X
3._LCT_EEN_108	CC	GG	AT	TT	GG	-	AA	-	TT	CC	GG	-	X_X	X_X
4._LCT_EEN_201	CC	GG	AT	TT	GG	-	AC	-	TT	CC	GG	-	X_X	X_X
5._LCT_EEN_37	CC	GG	AA	TT	GG	-	AA	-	TT	CC	GG	-	X_X	X_X

Input profile: LCT_EEN_251

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 177 T1

Dapeng Zhang, 2014

1._COCA_3308_/1_[CHA] RUQ_102

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LCT_EEN_250

91.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 103 T2

Dapeng Zhang, 2014

3._LCT_EEN_108

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X16 Y3

Dapeng Zhang, 2014

4._LCT_EEN_201

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 176 T1

Dapeng Zhang, 2014

5._LCT_EEN_37

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520

SNP Profiles matching LCT EEN 251

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Input profile: LCT_EEN_251

1._COCA_3308_/1_[CHA] RUQ_102

93.8 % 24 shared markers

2._LCT_EEN_250

91.3 % 40 shared markers

3._LCT_EEN_108

90.5 % 37 shared markers

4._LCT_EEN_201

90.5 % 37 shared markers

5._LCT_EEN_37

90.5 % 37 shared markers

93.8 %
24 shared markers

91.3 %
40 shared markers

90.5 %
37 shared markers

90.5 %
37 shared markers

90.5 %
37 shared markers