SNP Profiles matching LCT EEN 255

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 Key

 1234567891011121314
_Input profile
CCAAACGGTTCCAGCCTTAAGGCCCCGG
1._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
2._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
3._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
4._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
5._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
6._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
7._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
8._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
9._LCT_EEN_30
GGAAACGGTTCCAGCCTTAAGGCCCCGG
10._RUQ_1559
__ACGGTTCCGGCCTT_GGCCCCGG
11._RUQ_687
__AAGGTTCCGGCCTT_GGCCCCGG
12._LCT_EEN_241
_AAAAGGTTCCAGCC_AAGGACCCGG
13._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
14._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
15._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
16._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
17._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
18._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
19._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
20._GC-08-070-1-92
GGAAACGGTTCCAGCCTTAAGGAACCGG
21._LCT_EEN_300
CCAAAAGGTTCCGGCCTTAAGGCCCCGG
22._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
23._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
24._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
25._LCT_EEN_124
CGAAAAGGTTCCAGCTTTAAGGCCCCGG
26._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
27._GC-08-269-8-41
_AAAAGGTTCCAGCC_AAGGACCCGG
 1516171819202122232425262728
_Input profile
GGCCCTAGGGCCCCCGTTTTCGAATTAA
1._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
2._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
3._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
4._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
5._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
6._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
7._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
8._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
9._LCT_EEN_30
GGCCTTAAGGCCCCGGTTTTCCAATTAA
10._RUQ_1559
GGCCTT_GG_CCGGTT____AA
11._RUQ_687
GGCCTT_GG_CCGGTT____AA
12._LCT_EEN_241
GGCCTTAGGG_CG_TT_CGATCTAA
13._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
14._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
15._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
16._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
17._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
18._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
19._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
20._GC-08-070-1-92
GGCCCT_GGCCCGGGTTTTCGAACTAA
21._LCT_EEN_300
GGCCTTGGGGCCCCGGTTTTCCAACTAA
22._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
23._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
24._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
25._LCT_EEN_124
CGCCTTAGGGCCCCCGTTTTCCAATTAA
26._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
27._GC-08-269-8-41
GGCCTTAGGGCCCGGGTT_CGATCTAA
 293031323334353637383940  
_Input profile
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
1._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
2._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
3._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
4._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
5._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
6._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
7._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
8._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
9._LCT_EEN_30
CCGGAATTGG-AA-TTCCGG-X_XX_X
10._RUQ_1559
CC___GG___CTCCGG_X_XX_X
11._RUQ_687
CC___GG___TTCCGG_X_XX_X
12._LCT_EEN_241
CCGG_TTGGTTAATTTTCCGGCCX_XX_X
13._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
14._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
15._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
16._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
17._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
18._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
19._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
20._GC-08-070-1-92
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
21._LCT_EEN_300
CCGG-TTGGTTAATTTTCC-CCX_XX_X
22._LCT_EEN_241
CCGGATTTGGTTAATTTTCCGGCCX_XX_X
23._LCT_EEN_241
CCGGATTTGGTTAATTTTCCGGCCX_XX_X
24._LCT_EEN_241
CCGGATTTGGTTAATTTTCCGGCCX_XX_X
25._LCT_EEN_124
CCGGAATTGG-AA-CTCCGG-X_XX_X
26._LCT_EEN_241
CCGGATTT_TTAATTTTCCGGCCX_XX_X
27._GC-08-269-8-41
CCGG_TTGGTTAATTTTCCGGCCX_XX_X

Input profile: LCT_EEN_255

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

1._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 9 > FP
 Dapeng Zhang, 2016

2._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 6 > FP
 Dapeng Zhang, 2016

3._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 2 > FP
 Dapeng Zhang, 2016

4._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 1 > FP
 Dapeng Zhang, 2016

5._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 11
 Dapeng Zhang, 2016

6._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 10
 Dapeng Zhang, 2016

7._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 7
 Dapeng Zhang, 2016

8._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._LCT_EEN_30

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

10._AGU_31_[CHA] RUQ_1559

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._LCT_EEN_302 RUQ_687

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._LCT_EEN_241

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 2
 Dapeng Zhang, 2016

13._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

15._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

17._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

19._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._LCT_EEN_280 GC-08-070-1-92

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._LCT_EEN_300

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/448 T1
 Dapeng Zhang, 2014

22._LCT_EEN_241

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 6
 Dapeng Zhang, 2016

23._LCT_EEN_241

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 4
 Dapeng Zhang, 2016

24._LCT_EEN_241

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

25._LCT_EEN_124

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

26._LCT_EEN_241

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 3
 Dapeng Zhang, 2016

27._LCT_EEN_241 GC-08-269-8-41

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520