SNP Profiles matching LCT EEN 267

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 Key

 1234567891011121314
_Input profile
CCAAACGGTTCCAACCTTAAGGACCCGG
1._RUQ_185
__AAGGTTCCAGCCTT_GGACCCGG
2._RUQ_1638
__CCGGTTCCAACCTT_GGAACCGG
3._RUQ_1683
__CCGGTTCCAACCTT_GGAACCGG
4._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
5._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
6._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
7._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
8._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
9._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
10._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
11._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
12._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
13._GC-08-089-2-12
CCAACCGGTTCCAACCTTAAGGACCCGG
14._GC-05-069-2-20
CCAACCGGTTCCAACCTTAAGGACCCGG
15._GC-05-069-2-20
CCAACCGGTTCCAACCTTAAGGACCCGG
16._GC-05-069-2-20
CCAACCGGTTCCAACCTTAAGGACCCGG
17._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
18._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
19._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
20._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
21._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
22._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
23._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
24._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
25._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
26._LCT_EEN_90
CCAACCGGTTCCAACCTTAAGGACCCGG
27._POUND_10
CCAACCGGTTCCAACCTTAAGGACCCGG
28._POUND_10
CCAACCGGTTCCAACCTTAAGGACCCGG
29._POUND_10
CCAACCGGTTCCAACCTTAAGGACCCGG
30._LCT_EEN_66
CCAAACGGTTCCAACCTTAGGGAACCGG
31._GC-08-269-8-41
_AAAAGGTTCCAGCC_AAGGACCCGG
32._LCT_EEN_85
CCAAAAGGTTCC-CCTTAAGGAACCGG
 1516171819202122232425262728
_Input profile
GGCCCTAGGGCCCGGGTTCTCGTTTTAA
1._RUQ_185
GGCCTT_GG_CGGGTT____AA
2._RUQ_1638
GGCCCT_GG_GGGGTT____AA
3._RUQ_1683
GGCCCT_GG_GGGGTT____AA
4._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
5._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
6._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
7._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
8._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
9._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
10._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
11._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
12._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
13._GC-08-089-2-12
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
14._GC-05-069-2-20
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
15._GC-05-069-2-20
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
16._GC-05-069-2-20
GGCCCTAAGGCCGGGGTTCCGGTTTTAA
17._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
18._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
19._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
20._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
21._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
22._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
23._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
24._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
25._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
26._LCT_EEN_90
GGCCCTAAGG_GG_TTCCGGTTTTAA
27._POUND_10
GGCCCTAAGG_GG_TTCCGGTTTTAA
28._POUND_10
GGCCCTAAGG_GG_TTCCGGTTTTAA
29._POUND_10
GGCCCTAAGG_GG_TTCCGGTTTTAA
30._LCT_EEN_66
GGCCCTAGGGCCCCGGTTCTGGTTCTAA
31._GC-08-269-8-41
GGCCTTAGGGCCCGGGTT_CGATCTAA
32._LCT_EEN_85
GGCCCTAGGGCCCGGGTTTTCGATTTAA
 293031323334353637383940  
_Input profile
CCGGATTTGGTTAACCTTCCGGCCX_XX_X
1._RUQ_185
CC___GG___TTCCGG_X_XX_X
2._RUQ_1638
CC___GG___TTCCGG_X_XX_X
3._RUQ_1683
CC___GG___TTCCGG_X_XX_X
4._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
5._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
6._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
7._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
8._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
9._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
10._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
11._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
12._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
13._GC-08-089-2-12
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
14._GC-05-069-2-20
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
15._GC-05-069-2-20
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
16._GC-05-069-2-20
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
17._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
18._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
19._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
20._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
21._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
22._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
23._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
24._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
25._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
26._LCT_EEN_90
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
27._POUND_10
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
28._POUND_10
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
29._POUND_10
CCGGTTCTGGTT_CCTTCCGGCCX_XX_X
30._LCT_EEN_66
CCGGAATTGG-AA-CTCCGG-X_XX_X
31._GC-08-269-8-41
CCGG_TTGGTTAATTTTCCGGCCX_XX_X
32._LCT_EEN_85
CCGGTTTTGG-CC-TTCCGG-X_XX_X

Input profile: LCT_EEN_267

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

1._LCT_EEN_241 RUQ_185

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._UF_712 RUQ_1638

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._UF_712 RUQ_1683

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

6._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

7._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

8._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._LCT_EEN_90 GC-08-089-2-12

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._POUND_10 GC-05-069-2-20

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._POUND_10 GC-05-069-2-20

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._POUND_10 GC-05-069-2-20

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

18._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

19._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

20._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

21._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

22._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

23._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

24._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

25._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

26._LCT_EEN_90

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

27._POUND_10

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 3
 Dapeng Zhang, 2016

28._POUND_10

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 1 > FP
 Dapeng Zhang, 2016

29._POUND_10

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 4 > FP
 Dapeng Zhang, 2016

30._LCT_EEN_66

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D227 T9
 Dapeng Zhang, 2014

31._LCT_EEN_241 GC-08-269-8-41

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

32._LCT_EEN_85

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D254 T3
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520