SNP Profiles matching LCT EEN 300

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 Key

 1234567891011121314
_Input profile
CCAAAAGGTTCCGGCCTTAAGGCCCCGG
1._RUQ_687
__AAGGTTCCGGCCTT_GGCCCCGG
2._LCT_EEN_300
CCAAAAGGTTCCGGCTTTAGGGCCCCGG
3._LCT_EEN_346
CCAAAAGGTTCCGGCCTTGGGGCCCCGG
4._LCT_EEN_94
CCAAAAGGTTCCGGCTTTAGGGCCCCGG
5._RUQ_1559
__ACGGTTCCGGCCTT_GGCCCCGG
6._LCT_EEN_312
CGAAAAGGTTCCGGCCTTAAGGCCCCGG
7._LCT_EEN_432
CCAAAAGGTTCCGGCCTTGGGGCCCCGG
8._LCT_EEN_332
CCAAAAGGTTCCGGCTTTGGGGCCCCGG
9._RUQ_185
__AAGGTTCCAGCCTT_GGACCCGG
10._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
11._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
12._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
13._GC-08-269-8-41
CCAAAAGGTTCCAGCCTTAAGGACCCGG
14._RUQ_1548
__AAGGTTCCGGCCTT_GGACCCGG
15._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
16._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
17._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
18._LCT_EEN_241
CCAAAAGGTTCCAGCCTTAAGGACCCGG
19._LCT_EEN_63
GGAAAAGGTTCCGGCCTTAAGGACCCGG
20._LCT_EEN_234
GGAAAA-TTCCGGCCTT--CCCCGG
21._LCT_EEN_121
CCAAAAGGTTCCGGCCTTAAGGACCCGG
22._LCT_EEN_327
GGAAAAGGTTCCGGCCTTAAGGACCCGG
23._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
24._GC-08-269-8-41
_AAAAGGTTCCAGCC_AAGGACCCGG
25._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
26._RUQ_102
__ACGGTTCCGGCCTT_GGAACCGG
27._LCT_EEN_241
_AAAAGGTTCCAGCC_AAGGACCCGG
28._LCT_EEN_218
GGAAAAGGTTCCGGCCTTAAGGAACCGG
29._LCT_EEN_221
GGAAAAGGTTCCGGCCTTAAGGAACCGG
30._LCT_EEN_223
GGAAAAGGTTCCGGCCTTAAGGAACCGG
31._LCT_EEN_255
CCAAACGGTTCCAGCCTTAAGGCCCCGG
32._LCT_EEN_217
GGAAAAGGTTCCGGCCTTAAGGAACCGG
33._LCT_EEN_30
GGAAACGGTTCCAGCCTTAAGGCCCCGG
 1516171819202122232425262728
_Input profile
GGCCTTGGGGCCCCGGTTTTCCAACTAA
1._RUQ_687
GGCCTT_GG_CCGGTT____AA
2._LCT_EEN_300
GGCCTTGGGGCCCCGGTTTTCCAATTAA
3._LCT_EEN_346
GGCCTTGGGGCCCCGGTTTTCCAACTAA
4._LCT_EEN_94
GGCCTTGGGGCCCCGGTTTTCCAATTAA
5._RUQ_1559
GGCCTT_GG_CCGGTT____AA
6._LCT_EEN_312
GGCCTTGGGGCCCCGGTTTTCCAACCAA
7._LCT_EEN_432
GGCCTTGGGGCCCCGGTTTTCCAACCAA
8._LCT_EEN_332
GGCCTTGGGGCCCCGGTTTTCCAACTAA
9._RUQ_185
GGCCTT_GG_CGGGTT____AA
10._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
11._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
12._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
13._GC-08-269-8-41
GGCCTT_GGCCCGGGTTTTCGATCTAA
14._RUQ_1548
-CCTT_GG_CCCGTT____AA
15._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
16._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
17._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
18._LCT_EEN_241
GGCCTT_GG_CG_TTTTCGATCTAA
19._LCT_EEN_63
GGCCTTGGGGCCCCGGTTTTCGAATTAA
20._LCT_EEN_234
GGCCTTAAGGCC--TTTTCCAATTAA
21._LCT_EEN_121
CGCCTTGGGGCCCCCCTTTTCCAACCAA
22._LCT_EEN_327
GGCCTTAAGGCCCC-TTTTCCAATTAA
23._LCT_EEN_282
GGCCTTAAGGCCCC-TTTTCCAATTAA
24._GC-08-269-8-41
GGCCTTAGGGCCCGGGTT_CGATCTAA
25._LCT_EEN_282
GGCCTTAAGGCCCC-TTTTCCAATTAA
26._RUQ_102
GGCCTT_GT_CCGGTT____AA
27._LCT_EEN_241
GGCCTTAGGG_CG_TT_CGATCTAA
28._LCT_EEN_218
GGCCTTAAGGCCCCGGTTTTCCAATTAA
29._LCT_EEN_221
GGCCTTAAGGCCCC-TTTTCCAACCAA
30._LCT_EEN_223
GGCCTTAGGGCCCCCCTTTTCCAACTAA
31._LCT_EEN_255
GGCCCTAGGGCCCCCGTTTTCGAATTAA
32._LCT_EEN_217
CGCCTTAAGGCCCC-TTTTCCAACTAA
33._LCT_EEN_30
GGCCTTAAGGCCCCGGTTTTCCAATTAA
 2930313233343536373839   
_Input profile
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
1._RUQ_687
CC___GG___TTCC_X_XX_XX_X
2._LCT_EEN_300
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
3._LCT_EEN_346
CCGGCCTTGGTTAATTCTCCCCX_XX_XX_X
4._LCT_EEN_94
CCGG-TTGG-AA-TTCC-X_XX_XX_X
5._RUQ_1559
CC___GG___CTCC_X_XX_XX_X
6._LCT_EEN_312
CCGG-TTGGTTAATTCCCCCCX_XX_XX_X
7._LCT_EEN_432
CCGG-TTGGTTAATTCTCC-X_XX_XX_X
8._LCT_EEN_332
CCGGCCTTGGTTAATTCCCCCCX_XX_XX_X
9._RUQ_185
CC___GG___TTCC_X_XX_XX_X
10._GC-08-269-8-41
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
11._GC-08-269-8-41
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
12._GC-08-269-8-41
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
13._GC-08-269-8-41
CCGGCCTT_TTAATTTTCCCCX_XX_XX_X
14._RUQ_1548
CC___GG___CTCC_X_XX_XX_X
15._LCT_EEN_241
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
16._LCT_EEN_241
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
17._LCT_EEN_241
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
18._LCT_EEN_241
CCGGCCTT_TTAATTTTCCCCX_XX_XX_X
19._LCT_EEN_63
CCGG-TTGG-AA-TTCC-X_XX_XX_X
20._LCT_EEN_234
CCGG-TTGGTT-TTTTCCCCX_XX_XX_X
21._LCT_EEN_121
CCGGCCTTGGCTAATTTTCC-X_XX_XX_X
22._LCT_EEN_327
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
23._LCT_EEN_282
CCGG-TTGGTTAATTTTCCCCX_XX_XX_X
24._GC-08-269-8-41
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
25._LCT_EEN_282
CCGG-TTGGTTAATTTTCC-X_XX_XX_X
26._RUQ_102
CC___GG___TTCC_X_XX_XX_X
27._LCT_EEN_241
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
28._LCT_EEN_218
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
29._LCT_EEN_221
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
30._LCT_EEN_223
CCGG-TTGGTTAATTTTCCCCX_XX_XX_X
31._LCT_EEN_255
CCGG-TTGGTTAATTTTCCCCX_XX_XX_X
32._LCT_EEN_217
CCGG-TTGGTTAATTTTCC-X_XX_XX_X
33._LCT_EEN_30
CCGG-TTGG-AA-TTCC-X_XX_XX_X

Input profile: LCT_EEN_300

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/448 T1
 Dapeng Zhang, 2014

1._LCT_EEN_302 RUQ_687

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_300

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

3._LCT_EEN_346

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/430 T1
 Dapeng Zhang, 2014

4._LCT_EEN_94

95.7 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

5._AGU_31_[CHA] RUQ_1559

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._LCT_EEN_312

94.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

7._LCT_EEN_432

94.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

8._LCT_EEN_332

93.6 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 97 T1
 Dapeng Zhang, 2014

9._LCT_EEN_241 RUQ_185

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._LCT_EEN_241 GC-08-269-8-41

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._LCT_EEN_241 GC-08-269-8-41

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._LCT_EEN_241 GC-08-269-8-41

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._LCT_EEN_241 GC-08-269-8-41

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._LCT_EEN_341_/S-2 RUQ_1548

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._LCT_EEN_241

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 6
 Dapeng Zhang, 2016

16._LCT_EEN_241

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 4
 Dapeng Zhang, 2016

17._LCT_EEN_241

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._LCT_EEN_241

92.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 3
 Dapeng Zhang, 2016

19._LCT_EEN_63

92.9 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

20._LCT_EEN_234

92.2 %
32 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

21._LCT_EEN_121

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

22._LCT_EEN_327

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 61 T1
 Dapeng Zhang, 2014

23._LCT_EEN_282

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

24._LCT_EEN_241 GC-08-269-8-41

91.7 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._LCT_EEN_282

91.7 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

26._COCA_3308_/1_[CHA] RUQ_102

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._LCT_EEN_241

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 2
 Dapeng Zhang, 2016

28._LCT_EEN_218

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

29._LCT_EEN_221

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

30._LCT_EEN_223

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

31._LCT_EEN_255

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

32._LCT_EEN_217

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

33._LCT_EEN_30

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1520