SNP Profiles matching LCT EEN 300

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 Key

 1234567891011121314
_Input profile
CCAAAAGGTTCCGGCTTTAGGGCCCCGG
1._LCT_EEN_94
CCAAAAGGTTCCGGCTTTAGGGCCCCGG
2._RUQ_687
____AAGGTTCCGGCCTT__GGCCCCGG
3._LCT_EEN_300
CCAAAAGGTTCCGGCCTTAAGGCCCCGG
4._LCT_EEN_332
CCAAAAGGTTCCGGCTTTGGGGCCCCGG
5._LCT_EEN_346
CCAAAAGGTTCCGGCCTTGGGGCCCCGG
6._RUQ_1559
____ACGGTTCCGGCCTT__GGCCCCGG
7._LCT_EEN_432
CCAAAAGGTTCCGGCCTTGGGGCCCCGG
8._LCT_EEN_234
GGAAAA__TTCCGGCCTT____CCCCGG
9._LCT_EEN_63
GGAAAAGGTTCCGGCCTTAAGGACCCGG
10._RUQ_185
____AAGGTTCCAGCCTT__GGACCCGG
11._RUQ_1548
____AAGGTTCCGGCCTT__GGACCCGG
12._LCT_EEN_312
CGAAAAGGTTCCGGCCTTAAGGCCCCGG
13._LCT_EEN_327
GGAAAAGGTTCCGGCCTTAAGGACCCGG
14._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
15._LCT_EEN_87
CCAAAAGGTTCCAGCCTTGGGGACCCGG
16._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
17._LCT_EEN_124
CGAAAAGGTTCCAGCTTTAAGGCCCCGG
 1516171819202122232425262728
_Input profile
GGCCTTGGGGCCCCGGTTTTCCAATTAA
1._LCT_EEN_94
GGCCTTGGGGCCCCGGTTTTCCAATTAA
2._RUQ_687
GGCCTT__GG__CCGGTT________AA
3._LCT_EEN_300
GGCCTTGGGGCCCCGGTTTTCCAACTAA
4._LCT_EEN_332
GGCCTTGGGGCCCCGGTTTTCCAACTAA
5._LCT_EEN_346
GGCCTTGGGGCCCCGGTTTTCCAACTAA
6._RUQ_1559
GGCCTT__GG__CCGGTT________AA
7._LCT_EEN_432
GGCCTTGGGGCCCCGGTTTTCCAACCAA
8._LCT_EEN_234
GGCCTTAAGGCC____TTTTCCAATTAA
9._LCT_EEN_63
GGCCTTGGGGCCCCGGTTTTCGAATTAA
10._RUQ_185
GGCCTT__GG__CGGGTT________AA
11._RUQ_1548
__CCTT__GG__CCCGTT________AA
12._LCT_EEN_312
GGCCTTGGGGCCCCGGTTTTCCAACCAA
13._LCT_EEN_327
GGCCTTAAGGCCCC__TTTTCCAATTAA
14._LCT_EEN_282
GGCCTTAAGGCCCC__TTTTCCAATTAA
15._LCT_EEN_87
GGCCTTGGGGCCCCGGTTCTCCAATTAA
16._LCT_EEN_282
GGCCTTAAGGCCCC__TTTTCCAATTAA
17._LCT_EEN_124
CGCCTTAGGGCCCCCGTTTTCCAATTAA
 2930313233343536373839   
_Input profile
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
1._LCT_EEN_94
CCGG__TTGG__AA__TTCC__X_XX_XX_X
2._RUQ_687
CC______GG______TTCC__X_XX_XX_X
3._LCT_EEN_300
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
4._LCT_EEN_332
CCGGCCTTGGTTAATTCCCCCCX_XX_XX_X
5._LCT_EEN_346
CCGGCCTTGGTTAATTCTCCCCX_XX_XX_X
6._RUQ_1559
CC______GG______CTCC__X_XX_XX_X
7._LCT_EEN_432
CCGG__TTGGTTAATTCTCC__X_XX_XX_X
8._LCT_EEN_234
CCGG__TTGGTT__TTTTCCCCX_XX_XX_X
9._LCT_EEN_63
CCGG__TTGG__AA__TTCC__X_XX_XX_X
10._RUQ_185
CC______GG______TTCC__X_XX_XX_X
11._RUQ_1548
CC______GG______CTCC__X_XX_XX_X
12._LCT_EEN_312
CCGG__TTGGTTAATTCCCCCCX_XX_XX_X
13._LCT_EEN_327
CCGGCCTTGGTTAATTTTCCCCX_XX_XX_X
14._LCT_EEN_282
CCGG__TTGGTTAATTTTCCCCX_XX_XX_X
15._LCT_EEN_87
CCGG__TTGGTTAACTCTCC__X_XX_XX_X
16._LCT_EEN_282
CCGG__TTGGTTAATTTTCC__X_XX_XX_X
17._LCT_EEN_124
CCGG__TTGG__AA__CTCC__X_XX_XX_X

Input profile: LCT_EEN_300

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

1._LCT_EEN_94

identical
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

2._LCT_EEN_302 RUQ_687

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._LCT_EEN_300

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/448 T1
 Dapeng Zhang, 2014

4._LCT_EEN_332

94.9 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 97 T1
 Dapeng Zhang, 2014

5._LCT_EEN_346

94.9 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/430 T1
 Dapeng Zhang, 2014

6._AGU_31_[CHA] RUQ_1559

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._LCT_EEN_432

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

8._LCT_EEN_234

92.2 %
32 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

9._LCT_EEN_63

91.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

10._LCT_EEN_241 RUQ_185

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._LCT_EEN_341_/S-2 RUQ_1548

90.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._LCT_EEN_312

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

13._LCT_EEN_327

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 61 T1
 Dapeng Zhang, 2014

14._LCT_EEN_282

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

15._LCT_EEN_87

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 136 T2
 Dapeng Zhang, 2014

16._LCT_EEN_282

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

17._LCT_EEN_124

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1520