SNP Profiles matching LCT EEN 346

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	AA	GG	TT	CC	GG	CC	TT	GG	GG	CC	CC	GG
1._LCT_EEN_432	CC	AA	AA	GG	TT	CC	GG	CC	TT	GG	GG	CC	CC	GG
2._RUQ_1559	__	__	AC	GG	TT	CC	GG	CC	TT	__	GG	CC	CC	GG
3._RUQ_687	__	__	AA	GG	TT	CC	GG	CC	TT	__	GG	CC	CC	GG
4._LCT_EEN_332	CC	AA	AA	GG	TT	CC	GG	CT	TT	GG	GG	CC	CC	GG
5._LCT_EEN_300	CC	AA	AA	GG	TT	CC	GG	CC	TT	AA	GG	CC	CC	GG
6._RUQ_1548	__	__	AA	GG	TT	CC	GG	CC	TT	__	GG	AC	CC	GG
7._LCT_EEN_300	CC	AA	AA	GG	TT	CC	GG	CT	TT	AG	GG	CC	CC	GG
8._LCT_EEN_94	CC	AA	AA	GG	TT	CC	GG	CT	TT	AG	GG	CC	CC	GG
9._LCT_EEN_312	CG	AA	AA	GG	TT	CC	GG	CC	TT	AA	GG	CC	CC	GG
10._LCT_EEN_87	CC	AA	AA	GG	TT	CC	AG	CC	TT	GG	GG	AC	CC	GG
11._RUQ_185	__	__	AA	GG	TT	CC	AG	CC	TT	__	GG	AC	CC	GG
12._LCT_EEN_234	GG	AA	AA	__	TT	CC	GG	CC	TT	__	__	CC	CC	GG
13._LCT_EEN_231	GG	AA	AA	GG	TT	CC	GG	CC	TT	AG	GG	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	TT	GG	GG	CC	CC	GG	TT	TT	CC	AA	CT	AA
1._LCT_EEN_432	GG	CC	TT	GG	GG	CC	CC	GG	TT	TT	CC	AA	CC	AA
2._RUQ_1559	GG	CC	TT	__	GG	__	CC	GG	TT	__	__	__	__	AA
3._RUQ_687	GG	CC	TT	__	GG	__	CC	GG	TT	__	__	__	__	AA
4._LCT_EEN_332	GG	CC	TT	GG	GG	CC	CC	GG	TT	TT	CC	AA	CT	AA
5._LCT_EEN_300	GG	CC	TT	GG	GG	CC	CC	GG	TT	TT	CC	AA	CT	AA
6._RUQ_1548	__	CC	TT	__	GG	__	CC	CG	TT	__	__	__	__	AA
7._LCT_EEN_300	GG	CC	TT	GG	GG	CC	CC	GG	TT	TT	CC	AA	TT	AA
8._LCT_EEN_94	GG	CC	TT	GG	GG	CC	CC	GG	TT	TT	CC	AA	TT	AA
9._LCT_EEN_312	GG	CC	TT	GG	GG	CC	CC	GG	TT	TT	CC	AA	CC	AA
10._LCT_EEN_87	GG	CC	TT	GG	GG	CC	CC	GG	TT	CT	CC	AA	TT	AA
11._RUQ_185	GG	CC	TT	__	GG	__	CG	GG	TT	__	__	__	__	AA
12._LCT_EEN_234	GG	CC	TT	AA	GG	CC	__	__	TT	TT	CC	AA	TT	AA
13._LCT_EEN_231	GG	CC	TT	AA	GG	CC	CC	__	TT	TT	CC	AA	CT	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	CC	GG	CC	TT	GG	TT	AA	TT	CT	CC	CC	X_X	X_X	X_X
1._LCT_EEN_432	CC	GG	__	TT	GG	TT	AA	TT	CT	CC	__	X_X	X_X	X_X
2._RUQ_1559	CC	__	__	__	GG	__	__	__	CT	CC	__	X_X	X_X	X_X
3._RUQ_687	CC	__	__	__	GG	__	__	__	TT	CC	__	X_X	X_X	X_X
4._LCT_EEN_332	CC	GG	CC	TT	GG	TT	AA	TT	CC	CC	CC	X_X	X_X	X_X
5._LCT_EEN_300	CC	GG	CC	TT	GG	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
6._RUQ_1548	CC	__	__	__	GG	__	__	__	CT	CC	__	X_X	X_X	X_X
7._LCT_EEN_300	CC	GG	CC	TT	GG	TT	AA	TT	TT	CC	CC	X_X	X_X	X_X
8._LCT_EEN_94	CC	GG	__	TT	GG	__	AA	__	TT	CC	__	X_X	X_X	X_X
9._LCT_EEN_312	CC	GG	__	TT	GG	TT	AA	TT	CC	CC	CC	X_X	X_X	X_X
10._LCT_EEN_87	CC	GG	__	TT	GG	TT	AA	CT	CT	CC	__	X_X	X_X	X_X
11._RUQ_185	CC	__	__	__	GG	__	__	__	TT	CC	__	X_X	X_X	X_X
12._LCT_EEN_234	CC	GG	__	TT	GG	TT	__	TT	TT	CC	CC	X_X	X_X	X_X
13._LCT_EEN_231	CC	GG	__	TT	GG	TT	AA	TT	CT	CC	CC	X_X	X_X	X_X

Input profile: LCT_EEN_346

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N2/430 T1

Dapeng Zhang, 2014

1._LCT_EEN_432

98.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

2._AGU_31_[CHA] RUQ_1559

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LCT_EEN_302 RUQ_687

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._LCT_EEN_332

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 97 T1

Dapeng Zhang, 2014

5._LCT_EEN_300

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N2/448 T1

Dapeng Zhang, 2014

6._LCT_EEN_341_/S-2 RUQ_1548

95.5 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._LCT_EEN_300

94.9 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

8._LCT_EEN_94

94.3 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

9._LCT_EEN_312

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

10._LCT_EEN_87

93.2 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 136 T2

Dapeng Zhang, 2014

11._LCT_EEN_241 RUQ_185

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._LCT_EEN_234

90.6 %
32 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

13._LCT_EEN_231

90.5 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1520