SNP Profiles matching LCT EEN 37 /F

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 1234567891011121314
_Input profile
CGATAAGGTTCCAGCCATAAAGACCCGG
1._RUQ_153
GGATAAGGTTCCAGCCATAAAGACCCGG
2._RUQ_153
GGATAAGGTTCCAGCCATAAAGACCCGG
3._RUQ_153
__AAGGTTCCAGCC-_AGACCCGG
4._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
5._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
6._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
7._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
8._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
9._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
10._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
11._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
12._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
13._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
14._LCT_EEN_37_/F
CGATAAGGTTCCAGCCATAAAGACCCGG
15._POUND_4_/A
CGATAAGGTTCCAGCCATAAAGACCCGG
16._LCT_EEN_37_/F
CGATAAGG_CCAGCCATAAAGACCCGG
17._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
18._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
19._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
20._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
21._GC-02-027-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
22._GC-08-160-4-03
CGATAAGGTTCCAGCCATAAAGACCCGG
23._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
24._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
25._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
26._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
27._GC-08-161-4-04
CGATAAGGTTCCAGCCATAAAGACCCGG
28._GC-08-159-4-02
CGATAAGGTTCCAGCCATAAAGACCCGG
29._GC-02-027-4-03
CGATAAGG_CCAGCCATAAAGACCCGG
30._LCT_EEN_73_/D
CGATACGGTTCCAGCCATAAAGCCCCGG
 1516171819202122232425262728
_Input profile
GGCCTTAAGGCTCGCCTTTTCGAACTAA
1._RUQ_153
GGCCTTAAGG_CG_TTTTCGAACTAA
2._RUQ_153
GGCCTTAAGG_CG_TTTTCGAACTAA
3._RUQ_153
CGCCTT_GG_CGCCTT____AA
4._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
5._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
6._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
7._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
8._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
9._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
10._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
11._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
12._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
13._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
14._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
15._POUND_4_/A
GGCCTTGGGG_CG_TTTTCGAACTAA
16._LCT_EEN_37_/F
GGCCTTGGGG_CG_TTTTCGAACTAA
17._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
18._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
19._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
20._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
21._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
22._GC-08-160-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
23._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
24._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
25._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
26._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
27._GC-08-161-4-04
GGCCTTGGGGCCCGCGTTTTCGAACTAA
28._GC-08-159-4-02
GGCCTTGGGGCCCGCGTTTTCGAACTAA
29._GC-02-027-4-03
GGCCTTGGGGCCCGCGTTTTCGAACTAA
30._LCT_EEN_73_/D
GGCCTTAAGGCCCGCCTTCTCGATCTAA
 2930313233343536373839   
_Input profile
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
1._RUQ_153
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
2._RUQ_153
CCGGATTTGGTTCCCTCTCGGGX_XX_XX_X
3._RUQ_153
CC___GG___CTCGGGX_XX_XX_X
4._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
5._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
6._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
7._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
8._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
9._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
10._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
11._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
12._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
13._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
14._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
15._POUND_4_/A
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
16._LCT_EEN_37_/F
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
17._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
18._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
19._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
20._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
21._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
22._GC-08-160-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
23._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
24._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
25._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
26._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
27._GC-08-161-4-04
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
28._GC-08-159-4-02
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
29._GC-02-027-4-03
CCGGATTTGGTT_CTCTCGGGX_XX_XX_X
30._LCT_EEN_73_/D
CCGGAATTGG-CC-CTCCGGX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

1._LCT_EEN_37_/F RUQ_153

98.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F RUQ_153

98.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

15._POUND_4_/A

97.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 4
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

20._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._LCT_EEN_37_/F GC-02-027-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

22._LCT_EEN_37_/F GC-08-160-4-03

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

26._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._LCT_EEN_37_/F GC-08-161-4-04

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._POUND_4_/A GC-08-159-4-02

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._LCT_EEN_37_/F GC-02-027-4-03

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._LCT_EEN_73_/D

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D294 T8
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484