SNP Profiles matching LCT EEN 44/S-9

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 Key

 1234567891011121314
_Input profile
GGAAAAGGTTCCGGCCTTAAGGAACCGG
1._LCT_EEN_52
GGAAAAGGTTCCGGCCTTAAGGAACCGG
2._LCT_EEN_142
GGAAAAGGTTCCGGCCTTAAGGAACCGG
3._LCT_EEN_220
GGAAAAGGTTCCGGCCTTAAGGAACCGG
4._LCT_EEN_65
GGAAAAGGTTCCGGCCTTAAGGACCCGG
5._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
6._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
7._LCT_EEN_218
GGAAAAGGTTCCGGCCTTAAGGAACCGG
8._LCT_EEN_327
GGAAAAGGTTCCGGCCTTAAGGACCCGG
9._LCT_EEN_109_/S-102
GGAAAAGGTTCCGGCCTTAAGGAACCGG
10._LCT_EEN_283
GGAAAAGGTTCCGGCCTTAAGGACCCGG
11._LCT_EEN_37
GGAAACGGTTCCGGCCTTAAGGAACCGG
12._LCT_EEN_49
GGAAACGGTTCCGGCCTTAAGGAACCGG
13._RUQ_1600
__AAGGTTCCGGCCTT_GGAACCGG
14._RUQ_102
__ACGGTTCCGGCCTT_GGAACCGG
15._RUQ_178
__AAGGTTCCGGCCTT_GGAACCGG
16._LCT_EEN_217
GGAAAAGGTTCCGGCCTTAAGGAACCGG
17._LCT_EEN_221
GGAAAAGGTTCCGGCCTTAAGGAACCGG
18._LCT_EEN_234
GGAAAA-TTCCGGCCTT--CCCCGG
19._LCT_EEN_141
GGAAAAGGTTCCGGCCTTAAGGACCCGG
20._LCT_EEN_146
GGAAAAGGTTCCGGCCTTAAGGACCCGG
21._LCT_EEN_223
GGAAAAGGTTCCGGCCTTAAGGAACCGG
22._LCT_EEN_38
GGAAAAGGTTCCGGCCTTAAGGACCCGG
23._LCT_EEN_219
CGAAAAGGTTCCGGCCTTAAGGACCCGG
24._LCT_EEN_231
GGAAAAGGTTCCGGCCTTAGGGAACCGG
25._RUQ_1548
__AAGGTTCCGGCCTT_GGACCCGG
26._LCT_EEN_232
GGAAAAGGTTCCGGCCTTAAGGACCCGG
27._LCT_EEN_376
GGAACCGGTTCCGGCCTTAAGGAACCGG
28._LCT_EEN_379
GGAACCGGTTCCGGCCTTAAGGAACCGG
29._LCT_EEN_378
GGAAAAGGTTCCGGCCTTAAGGACCCGG
30._LCT_EEN_163_/D
GGAAACGGTTCCAGCCTTAAGGAACCGG
31._LCT_EEN_227
CGAAAAGGTTCCGGCCTTAGGGAACCGG
32._LCT_EEN_30
GGAAACGGTTCCAGCCTTAAGGCCCCGG
33._LCT_EEN_63
GGAAAAGGTTCCGGCCTTAAGGACCCGG
34._RUQ_180
__ACGGTTCCAGCCTT_GGAACCGG
35._RUQ_687
__AAGGTTCCGGCCTT_GGCCCCGG
36._RUQ_1547
__ACGGTTCCGGCCTT_GGAACCGG
37._LCT_EEN_372_/S-301
GGAAAAGGTTCCGGCCATAAGGACCCGG
38._LCT_EEN_57
GGAAACGGTTCCGGCCTTAAGGACCCGG
39._LCT_EEN_123
CGAAAAGGTTCCGGTTTTAAGGCCCCGG
40._LCT_EEN_32
CGAAAAGGTTCCAGCCTTAAGGAACCGG
41._LCT_EEN_321_/S-1
GGAAACGGTTCCGGCCTTAAGGACCCGG
 1516171819202122232425262728
_Input profile
GGCCTTAAGTCCCCCGTTTTCCAATTAA
1._LCT_EEN_52
GGCCTTAAGTCCCCCCTTTTCCAATTAA
2._LCT_EEN_142
GGCCTTAAGTCCCC-TTTTCCAATTAA
3._LCT_EEN_220
GGCCTTAAGGCCCCCGTTTTCCAATTAA
4._LCT_EEN_65
GGCCTTAAGTCCCCCCTTTTCCAATTAA
5._LCT_EEN_282
GGCCTTAAGGCCCC-TTTTCCAATTAA
6._LCT_EEN_282
GGCCTTAAGGCCCC-TTTTCCAATTAA
7._LCT_EEN_218
GGCCTTAAGGCCCCGGTTTTCCAATTAA
8._LCT_EEN_327
GGCCTTAAGGCCCC-TTTTCCAATTAA
9._LCT_EEN_109_/S-102
CGCCTTAAGTCCCCCCTTTTCGAATTAA
10._LCT_EEN_283
GGCCTTAAGTCCCCCCTTTTCCAACTAA
11._LCT_EEN_37
GGCCTTAAGTCCCCGGTTTTCGAATTAA
12._LCT_EEN_49
GGCCTTAAGTCCCCCCTTTTCCAACTAA
13._RUQ_1600
GGCCTT_TT_CCCCTT____AA
14._RUQ_102
GGCCTT_GT_CCGGTT____AA
15._RUQ_178
GGCCTT_TT_CCCCTT____AA
16._LCT_EEN_217
CGCCTTAAGGCCCC-TTTTCCAACTAA
17._LCT_EEN_221
GGCCTTAAGGCCCC-TTTTCCAACCAA
18._LCT_EEN_234
GGCCTTAAGGCC--TTTTCCAATTAA
19._LCT_EEN_141
GGCCTTAAGGCCCCCCTTTTCCAATTAA
20._LCT_EEN_146
GGCCTTAAGGCCCCCCTTTTCCATTTAA
21._LCT_EEN_223
GGCCTTAGGGCCCCCCTTTTCCAACTAA
22._LCT_EEN_38
GGCCTTAAGGCCCCCCTTTTCCAATTAA
23._LCT_EEN_219
GGCCTTAAGTCCCC-TTTTCCAATTAA
24._LCT_EEN_231
GGCCTTAAGGCCCC-TTTTCCAACTAA
25._RUQ_1548
-CCTT_GG_CCCGTT____AA
26._LCT_EEN_232
GGCCTTGGTTCCCCCCTTTTCCAATTAA
27._LCT_EEN_376
GGCCTTAAGGCCCCCCTTTTCGAATTAA
28._LCT_EEN_379
GGCCTTAAGGCCCCCCTTTTCGAATTAA
29._LCT_EEN_378
GGCCTTAAGGCCCC-TTTTCGATTTAA
30._LCT_EEN_163_/D
GGCCTTAATTCCCCCCTTTTCCAACTAA
31._LCT_EEN_227
GGCCTTAGGGCCCCCCTTTTCCAATTAA
32._LCT_EEN_30
GGCCTTAAGGCCCCGGTTTTCCAATTAA
33._LCT_EEN_63
GGCCTTGGGGCCCCGGTTTTCGAATTAA
34._RUQ_180
GGCCTT_TT_CCCCTT____AA
35._RUQ_687
GGCCTT_GG_CCGGTT____AA
36._RUQ_1547
GGCCTT_GG_CCCCTT____AA
37._LCT_EEN_372_/S-301
GGCCCCAGGTCCCCCCTTTTCCAATTAA
38._LCT_EEN_57
GGCCTTAAGGCCCCCCTTTTCGAACTAA
39._LCT_EEN_123
CGCCTTAAGTCCCCCCTTTTCCAATTAA
40._LCT_EEN_32
GGCCCTAATTCCCCGGTTTTCCATTTAA
41._LCT_EEN_321_/S-1
GGCCCCAAGGCCCCCCTTTTCCATTTAA
 293031323334353637     
_Input profile
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
1._LCT_EEN_52
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
2._LCT_EEN_142
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
3._LCT_EEN_220
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
4._LCT_EEN_65
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
5._LCT_EEN_282
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
6._LCT_EEN_282
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
7._LCT_EEN_218
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
8._LCT_EEN_327
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
9._LCT_EEN_109_/S-102
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
10._LCT_EEN_283
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
11._LCT_EEN_37
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
12._LCT_EEN_49
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
13._RUQ_1600
CC___GG_TTCCGGX_XX_XX_XX_XX_X
14._RUQ_102
CC___GG_TTCCGGX_XX_XX_XX_XX_X
15._RUQ_178
CC___GG_TTCCGGX_XX_XX_XX_XX_X
16._LCT_EEN_217
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
17._LCT_EEN_221
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
18._LCT_EEN_234
CCGG-TTGG-TTCC-X_XX_XX_XX_XX_X
19._LCT_EEN_141
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
20._LCT_EEN_146
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
21._LCT_EEN_223
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
22._LCT_EEN_38
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
23._LCT_EEN_219
CCGGAATTGGAACCCCGGX_XX_XX_XX_XX_X
24._LCT_EEN_231
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
25._RUQ_1548
CC___GG_CTCCGGX_XX_XX_XX_XX_X
26._LCT_EEN_232
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
27._LCT_EEN_376
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
28._LCT_EEN_379
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
29._LCT_EEN_378
CCGG-TTGGACTTCC-X_XX_XX_XX_XX_X
30._LCT_EEN_163_/D
CCGGAATTGGACTTCCGGX_XX_XX_XX_XX_X
31._LCT_EEN_227
CCGGAATTGGAACTCCGGX_XX_XX_XX_XX_X
32._LCT_EEN_30
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
33._LCT_EEN_63
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
34._RUQ_180
CC___GG_TTCCGGX_XX_XX_XX_XX_X
35._RUQ_687
CC___GG_TTCCGGX_XX_XX_XX_XX_X
36._RUQ_1547
CC___GG_CTCCGGX_XX_XX_XX_XX_X
37._LCT_EEN_372_/S-301
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
38._LCT_EEN_57
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X
39._LCT_EEN_123
CCGGAATTGGAATTCCGGX_XX_XX_XX_XX_X
40._LCT_EEN_32
CCGGAATTGGACTTCCGGX_XX_XX_XX_XX_X
41._LCT_EEN_321_/S-1
CCGG-TTGGAATTCC-X_XX_XX_XX_XX_X

Input profile: LCT_EEN_44_/S-9

 
 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 146 T2
 Dapeng Zhang, 2014

1._LCT_EEN_52

98.6 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

2._LCT_EEN_142

98.6 %
36 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

3._LCT_EEN_220

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

4._LCT_EEN_65

97.3 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

5._LCT_EEN_282

97.2 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

6._LCT_EEN_282

97.2 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

7._LCT_EEN_218

97.1 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

8._LCT_EEN_327

97.1 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 61 T1
 Dapeng Zhang, 2014

9._LCT_EEN_109_/S-102

95.9 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 137 T1
 Dapeng Zhang, 2014

10._LCT_EEN_283

95.9 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 18 T1
 Dapeng Zhang, 2014

11._LCT_EEN_37

95.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

12._LCT_EEN_49

95.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

13._AMAZ_11 RUQ_1600

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._COCA_3308_/1_[CHA] RUQ_102

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._LCT_EEN_163_/A RUQ_178

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._LCT_EEN_217

95.8 %
36 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

17._LCT_EEN_221

95.6 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

18._LCT_EEN_234

94.8 %
29 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

19._LCT_EEN_141

94.6 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

20._LCT_EEN_146

94.6 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

21._LCT_EEN_223

94.6 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

22._LCT_EEN_38

94.6 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

23._LCT_EEN_219

94.4 %
36 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

24._LCT_EEN_231

94.4 %
36 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

25._LCT_EEN_341_/S-2 RUQ_1548

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._LCT_EEN_232

93.2 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

27._LCT_EEN_376

92.9 %
35 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

28._LCT_EEN_379

92.9 %
35 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

29._LCT_EEN_378

92.6 %
34 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

30._LCT_EEN_163_/D

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 104 T1
 Dapeng Zhang, 2014

31._LCT_EEN_227

91.9 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

32._LCT_EEN_30

91.9 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

33._LCT_EEN_63

91.9 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

34._LCT_EEN_163_/D RUQ_180

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

35._LCT_EEN_302 RUQ_687

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

36._NAPO_25_[CHA] RUQ_1547

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._LCT_EEN_372_/S-301

91.4 %
35 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 X1 Y7
 Dapeng Zhang, 2014

38._LCT_EEN_57

91.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

39._LCT_EEN_123

90.5 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

40._LCT_EEN_32

90.5 %
37 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

41._LCT_EEN_321_/S-1

90 %
35 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/428 T1
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1350 35TcSNP1442
36TcSNP1458 37TcSNP1484