SNP Profiles matching LCT EEN 73 /S

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
1._RUQ_185	_	_	AA	GG	TT	CC	AG	CC	TT	_	GG	AC	CC	GG
2._RUQ_1562	_	_	AA	GG	TT	CC	AG	CT	TT	_	GG	AA	CC	GG
3._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
4._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
5._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
6._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
7._LCT_EEN_280	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
8._LCT_EEN_241	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
9._LCT_EEN_241	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
10._LCT_EEN_241	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
11._LCT_EEN_241	CC	AA	AA	GG	TT	CC	AG	CC	TT	AA	GG	AC	CC	GG
12._GC-08-269-8-41	_	AA	AA	GG	TT	CC	AG	CC	_	AA	GG	AC	CC	GG
13._LCT_EEN_241	_	AA	AA	GG	TT	CC	AG	CC	_	AA	GG	AC	CC	GG
14._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
15._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
16._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
17._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
18._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
19._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
20._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
21._GC-08-070-1-92	GG	AA	AC	GG	TT	CC	AG	CC	TT	AA	GG	AA	CC	GG
22._LCT_EEN_85	CC	AA	AA	GG	TT	CC	-	CC	TT	AA	GG	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CG	CC	CT	GG	GT	CC	CG	GG	TT	TT	CG	AT	CT	AA
1._RUQ_185	GG	CC	TT	_	GG	_	CG	GG	TT	_	_	_	_	AA
2._RUQ_1562	CC	CC	CC	_	GG	_	CG	GG	TT	_	_	_	_	AA
3._GC-08-269-8-41	GG	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA
4._GC-08-269-8-41	GG	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA
5._GC-08-269-8-41	GG	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA
6._GC-08-269-8-41	GG	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA
7._LCT_EEN_280	GG	CC	CT	GG	GG	_	CG	_	TT	TT	CG	AA	CT	AA
8._LCT_EEN_241	GG	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA
9._LCT_EEN_241	GG	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA
10._LCT_EEN_241	GG	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA
11._LCT_EEN_241	GG	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA
12._GC-08-269-8-41	GG	CC	TT	AG	GG	CC	CG	GG	TT	_	CG	AT	CT	AA
13._LCT_EEN_241	GG	CC	TT	AG	GG	_	CG	_	TT	_	CG	AT	CT	AA
14._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
15._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
16._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
17._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
18._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
19._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
20._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
21._GC-08-070-1-92	GG	CC	CT	_	GG	CC	CG	GG	TT	TT	CG	AA	CT	AA
22._LCT_EEN_85	GG	CC	CT	AG	GG	CC	CG	GG	TT	TT	CG	AT	TT	AA

	29	30	31	32	33	34	35	36	37
_Input profile	CC	GG	AT	TT	GG	AC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
1._RUQ_185	CC	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
2._RUQ_1562	CC	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
3._GC-08-269-8-41	CC	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
4._GC-08-269-8-41	CC	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
5._GC-08-269-8-41	CC	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
6._GC-08-269-8-41	CC	GG	AT	TT	_	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
7._LCT_EEN_280	CC	GG	AA	TT	GG	AC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_241	CC	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
9._LCT_EEN_241	CC	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
10._LCT_EEN_241	CC	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
11._LCT_EEN_241	CC	GG	AT	TT	_	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
12._GC-08-269-8-41	CC	GG	_	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
13._LCT_EEN_241	CC	GG	_	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
14._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
15._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
16._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
17._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
18._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
19._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
20._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
21._GC-08-070-1-92	CC	GG	AA	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X
22._LCT_EEN_85	CC	GG	TT	TT	GG	CC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_73_/S

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X10 Y3

Dapeng Zhang, 2014

1._LCT_EEN_241 RUQ_185

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LCT_EEN_401 RUQ_1562

91.7 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LCT_EEN_241 GC-08-269-8-41

91.7 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._LCT_EEN_241 GC-08-269-8-41

91.7 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._LCT_EEN_241 GC-08-269-8-41

91.7 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._LCT_EEN_241 GC-08-269-8-41

91.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._LCT_EEN_280

91.4 %
35 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A144 T1

Dapeng Zhang, 2016

8._LCT_EEN_241

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

9._LCT_EEN_241

91.2 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

10._LCT_EEN_241

91.2 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._LCT_EEN_241

90.9 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

12._LCT_EEN_241 GC-08-269-8-41

90.9 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._LCT_EEN_241

90.3 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

14._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

15._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

16._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

18._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

19._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP4

20._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

21._LCT_EEN_280 GC-08-070-1-92

90.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

22._LCT_EEN_85

90.3 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D254 T3

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1165	33	TcSNP1253	34	TcSNP1350	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484