SNP Profiles matching LCT EEN 85

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AA	CC	GG	GG
1._RUQ_185	_	_	AA	GG	TT	CC	CC	TT	_	GG	AC	CC	GG	GG
2._RUQ_107	_	_	AA	GG	TT	CC	CT	TT	_	GG	AA	CC	GG	GG
3._RUQ_1638	_	_	CC	GG	TT	CC	CC	TT	_	GG	AA	CC	GG	GG
4._RUQ_1683	_	_	CC	GG	TT	CC	CC	TT	_	GG	AA	CC	GG	GG
5._LCT_EEN_33	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
6._LCT_EEN_84	CC	AA	AC	GG	TT	CC	CC	TT	AG	GG	AC	CC	GG	GG
7._GC-08-269-8-41	_	AA	AA	GG	TT	CC	CC	_	AA	GG	AC	CC	GG	GG
8._LCT_EEN_241	_	AA	AA	GG	TT	CC	CC	_	AA	GG	AC	CC	GG	GG
9._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
10._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
11._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
12._RUQ_102	_	_	AC	GG	TT	CC	CC	TT	_	GG	AA	CC	GG	GG
13._RUQ_687	_	_	AA	GG	TT	CC	CC	TT	_	GG	CC	CC	GG	GG
14._RUQ_1562	_	_	AA	GG	TT	CC	CT	TT	_	GG	AA	CC	GG	CC
15._GC-08-269-8-41	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
16._LCT_EEN_241	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
17._LCT_EEN_241	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
18._LCT_EEN_241	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
19._LCT_EEN_241	CC	AA	AA	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
20._LCT_EEN_267	CC	AA	AC	GG	TT	CC	CC	TT	AA	GG	AC	CC	GG	GG
21._LCT_EEN_67	CC	AT	AA	GG	TT	CC	CC	TT	AA	GG	AA	CC	GG	GG
22._LCT_EEN_73_/S	CG	AA	AA	GG	TT	CC	CC	TT	AA	GG	AA	CC	GG	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	CT	AG	GG	CC	CG	GG	TT	TT	CG	AT	TT	AA	CC
1._RUQ_185	CC	TT	_	GG	_	CG	GG	TT	_	_	_	_	AA	CC
2._RUQ_107	CC	CT	_	GG	_	CC	GG	TT	_	_	_	_	AA	CC
3._RUQ_1638	CC	CT	_	GG	_	GG	GG	TT	_	_	_	_	AA	CC
4._RUQ_1683	CC	CT	_	GG	_	GG	GG	TT	_	_	_	_	AA	CC
5._LCT_EEN_33	CC	CC	AA	GG	CC	CC	GG	TT	TT	CG	AT	TT	AA	CC
6._LCT_EEN_84	CC	CT	AG	GG	CC	GG	GG	TT	TT	CG	AA	TT	AA	CC
7._GC-08-269-8-41	CC	TT	AG	GG	CC	CG	GG	TT	_	CG	AT	CT	AA	CC
8._LCT_EEN_241	CC	TT	AG	GG	_	CG	_	TT	_	CG	AT	CT	AA	CC
9._GC-08-269-8-41	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA	CC
10._GC-08-269-8-41	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA	CC
11._GC-08-269-8-41	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA	CC
12._RUQ_102	CC	TT	_	GT	_	CC	GG	TT	_	_	_	_	AA	CC
13._RUQ_687	CC	TT	_	GG	_	CC	GG	TT	_	_	_	_	AA	CC
14._RUQ_1562	CC	CC	_	GG	_	CG	GG	TT	_	_	_	_	AA	CC
15._GC-08-269-8-41	CC	TT	_	GG	CC	CG	GG	TT	TT	CG	AT	CT	AA	CC
16._LCT_EEN_241	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA	CC
17._LCT_EEN_241	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA	CC
18._LCT_EEN_241	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA	CC
19._LCT_EEN_241	CC	TT	_	GG	_	CG	_	TT	TT	CG	AT	CT	AA	CC
20._LCT_EEN_267	CC	CT	AG	GG	CC	CG	GG	TT	CT	CG	TT	TT	AA	CC
21._LCT_EEN_67	CC	CT	GG	GG	CC	CC	GG	TT	TT	GG	AA	TT	AA	CC
22._LCT_EEN_73_/S	CC	CT	GG	GT	CC	CG	GG	TT	TT	CG	AT	CT	AA	CC

	29	30	31	32	33	34	35	36
_Input profile	GG	TT	TT	GG	CC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_185	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_107	_	_	_	GT	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_1638	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_1683	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._LCT_EEN_33	GG	AT	TT	GG	CC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._LCT_EEN_84	GG	TT	TT	GG	CC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-08-269-8-41	GG	_	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_241	GG	_	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-08-269-8-41	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-08-269-8-41	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-08-269-8-41	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_102	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_687	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_1562	_	_	_	GG	_	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-08-269-8-41	GG	AT	TT	_	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
16._LCT_EEN_241	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
17._LCT_EEN_241	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
18._LCT_EEN_241	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
19._LCT_EEN_241	GG	AT	TT	_	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
20._LCT_EEN_267	GG	AT	TT	GG	AA	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X
21._LCT_EEN_67	GG	TT	TT	GG	CC	TT	CC	AA	X_X	X_X	X_X	X_X	X_X	X_X
22._LCT_EEN_73_/S	GG	AT	TT	GG	AC	TT	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_85

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D254 T3

Dapeng Zhang, 2014

1._LCT_EEN_241 RUQ_185

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._EQX_/J_[CHA] RUQ_107

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._UF_712 RUQ_1638

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._UF_712 RUQ_1683

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._LCT_EEN_33

93.1 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

6._LCT_EEN_84

93.1 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 19 T1

Dapeng Zhang, 2014

7._LCT_EEN_241 GC-08-269-8-41

92.2 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._LCT_EEN_241

91.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

9._LCT_EEN_241 GC-08-269-8-41

91.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._LCT_EEN_241 GC-08-269-8-41

91.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._LCT_EEN_241 GC-08-269-8-41

91.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._COCA_3308_/1_[CHA] RUQ_102

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._LCT_EEN_302 RUQ_687

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._LCT_EEN_401 RUQ_1562

91.3 %
23 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._LCT_EEN_241 GC-08-269-8-41

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

16._LCT_EEN_241

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

17._LCT_EEN_241

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

18._LCT_EEN_241

90.9 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

19._LCT_EEN_241

90.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

20._LCT_EEN_267

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

21._LCT_EEN_67

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 94 T3

Dapeng Zhang, 2014

22._LCT_EEN_73_/S

90.3 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X10 Y3

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP242	8	TcSNP372	9	TcSNP429	10	TcSNP469
11	TcSNP529	12	TcSNP534	13	TcSNP560	14	TcSNP577	15	TcSNP591
16	TcSNP619	17	TcSNP645	18	TcSNP723	19	TcSNP836	20	TcSNP872
21	TcSNP878	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1165	32	TcSNP1253	33	TcSNP1350	34	TcSNP1442	35	TcSNP1458
36	TcSNP1484