SNP Profiles matching JA 9 /37 [POU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTTTAACCGGAACCTTGGTTAAGGTTCC
1._MAR_1___
TTTTAACCGGAACCTTGGTTAAGGTTCC
2._MAR_10___
TTTTAACCGGAACCTTGGTTAAGGTTCC
3._MAR_13___
TTTTAACCGGAACCTTGGTTAAGGTTCC
4._MAR_14___
TTTTAACCGGAACCTTGGTTAAGGTTCC
5._MAR_22___
TTTTAACCGGAACCTTGGTTAAGGTTCC
6._MAR_9___
TTTTAACCGGAACCTTGGTTAAGGTTCC
7._MAR_1___
TTTTAACCGGAACCTTGGTTAA__TTCC
8._MAR_20___
TTTTAACCGGAACCTTGGTTAA__TTCC
9._LCT_EEN_62_/S-4___
__TTAACC__AACCTTGGTT__GG__CC
10._MAR_9___
__TTAACC__AACCTTGGTT__GG__CC
11._MAR_11___
TTTTAACCGGAACCTTCCTTAAGGTTCC
12._MAR_12___
TTTTAACCGGAACCTTCCTTAAGGTTCC
13._MAR_17___
TTTTAACCGGAACCTTCCTTAAGGTTCC
14._GDL_7___
__TTAACC__AACCTTGGCC__GG__CC
15._GF_32___
__TTAACC__AACCTTGGCC__GG__CC
16._MARPER_22___
TTGTAACCGGAACCTTCCTTAAGGTTCC
17._AMAZ_5_/2___
TTTTAACCGGAACCTTCCTTAAGG__CC
18._DOM_1___
ATTTAACCAGAACCTTGGTTAAGG__CC
19._PA_167_[PER]___
TTGTAACCGGAGCCTTCGTTAA__TTCC
20._LCT_EEN_90_/S-7___
TTTTAACCGGAACCTTCCTTAAGGTTCC
21._BE_10___
TTTTAA__GGAA__TTCCTTAAGG__CC
22._SIAL_70___
TTTTAACCGGAACCTTCCTTAAGG__CC
23._JA_9_/37_[POU]___
TTTTAGCCGGAACCTTCCCTAAGG__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27  
_Input profile
GGAATTAAAAAACCCCAACCGGAATTX_X
1._MAR_1___
GGAATTAAAAAACCCCAACCGGAATTX_X
2._MAR_10___
GGAATTAAAAAACCCCAACCGGAATTX_X
3._MAR_13___
GGAATTAAAAAACCCCAACCGGAATTX_X
4._MAR_14___
GGAATTAAAAAACCCCAACCGGAATTX_X
5._MAR_22___
GGAATTAAAAAACCCCAACCGGAATTX_X
6._MAR_9___
GGAATTAAAAAACCCCAACCGGAATTX_X
7._MAR_1___
GGAATTAAAAAACCCCAACCGGAATTX_X
8._MAR_20___
GGAATTAAAAAACCCCAACCGGAATTX_X
9._LCT_EEN_62_/S-4___
______AA__________CCGGAA__X_X
10._MAR_9___
______AA__________CCGGAA__X_X
11._MAR_11___
GGAATTAAAAAACCCCAACCGGAATTX_X
12._MAR_12___
GGAATTAAAAAACCCCAACCGGAATTX_X
13._MAR_17___
GGAATTAAAAAACCCCAACCGGAATTX_X
14._GDL_7___
______AA__________CCGGAA__X_X
15._GF_32___
______AA__________CCGGAA__X_X
16._MARPER_22___
GGAATTAAAAAACCCCAACCGGAACTX_X
17._AMAZ_5_/2___
GGAATTGGAAAACCCCAACCGGAATTX_X
18._DOM_1___
GGAATTAGAAAACCCCAACCGGAGTTX_X
19._PA_167_[PER]___
GGAATTAGAAAACCCCAACCGGAATTX_X
20._LCT_EEN_90_/S-7___
GGAATTGGAAAACC__AACCGGAA__X_X
21._BE_10___
__AATTGGAAAACCCC__CCGGAATTX_X
22._SIAL_70___
GGAATTGGAAAACCCCAACCGGAGTTX_X
23._JA_9_/37_[POU]___
GGAATTAGAAAACCCCAACCGGAATTX_X

Input profile: MAR_21

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B267 T2
 Dapeng Zhang, 2014

1._MAR_1

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_10

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B243 T1
 Dapeng Zhang, 2014

3._MAR_13

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B189 T1
 Dapeng Zhang, 2014

4._MAR_14

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B207 T1
 Dapeng Zhang, 2014

5._MAR_22

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B190 T1
 Dapeng Zhang, 2014

6._MAR_9

identical
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B220 T3
 Dapeng Zhang, 2014

7._MAR_1

identical
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

8._MAR_20

identical
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

9._LCT_EEN_62_/S-4 RUQ_678

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._MAR_9 RUQ_557

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._MAR_11

96.3 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B252 T2
 Dapeng Zhang, 2014

12._MAR_12

96.3 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B268 T2
 Dapeng Zhang, 2014

13._MAR_17

96.3 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B221 T1
 Dapeng Zhang, 2014

14._GDL_7 RUQ_554

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._GF_32 RUQ_648

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._MARPER_22

92.6 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 475
 Dapeng Zhang, 2014

17._AMAZ_5_/2

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

18._DOM_1

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B191 T2
 Dapeng Zhang, 2016

19._PA_167_[PER]

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 736
 Dapeng Zhang, 2014

20._LCT_EEN_90_/S-7

92 %
25 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 178 T1
 Dapeng Zhang, 2014

21._BE_10

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

22._SIAL_70

90.4 %
26 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._JA_9_/37_[POU]

90.4 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520