SNP Profiles matching LCT EEN 90/S-7

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTGTAACCGGAACCTTCCTTAAGGTTCC
1._MAR_11___
TTTTAACCGGAACCTTCCTTAAGGTTCC
2._MAR_12___
TTTTAACCGGAACCTTCCTTAAGGTTCC
3._MAR_17___
TTTTAACCGGAACCTTCCTTAAGGTTCC
4._LCT_EEN_90_/S-7___
TTTTAACCGGAACCTTCCTTAAGGTTCC
5._CC_41___
__GTAACC__AACCTTCGTT__GG__CC
6._CC_41___
__GTAACC__AACCTTCGTT__GG__CC
7._MAR_1___
TTTTAACCGGAACCTTGGTTAAGGTTCC
8._MAR_10___
TTTTAACCGGAACCTTGGTTAAGGTTCC
9._MAR_13___
TTTTAACCGGAACCTTGGTTAAGGTTCC
10._MAR_14___
TTTTAACCGGAACCTTGGTTAAGGTTCC
11._MAR_21___
TTTTAACCGGAACCTTGGTTAAGGTTCC
12._MAR_22___
TTTTAACCGGAACCTTGGTTAAGGTTCC
13._MAR_9___
TTTTAACCGGAACCTTGGTTAAGGTTCC
14._AMAZ_5_/2___
TTTTAACCGGAACCTTCCTTAAGG__CC
15._MAR_1___
TTTTAACCGGAACCTTGGTTAA__TTCC
16._MAR_20___
TTTTAACCGGAACCTTGGTTAA__TTCC
17._PA_167_[PER]___
TTGTAACCGGAGCCTTCGTTAA__TTCC
18._BE_10___
TTTTAA__GGAA__TTCCTTAAGG__CC
19._SIAL_70___
TTTTAACCGGAACCTTCCTTAAGG__CC
20._JA_9_/37_[POU]___
TTTTAGCCGGAACCTTCCCTAAGG__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27  
_Input profile
GGAATTAAAAAACCCCAACCGGAACTX_X
1._MAR_11___
GGAATTAAAAAACCCCAACCGGAATTX_X
2._MAR_12___
GGAATTAAAAAACCCCAACCGGAATTX_X
3._MAR_17___
GGAATTAAAAAACCCCAACCGGAATTX_X
4._LCT_EEN_90_/S-7___
GGAATTGGAAAACC__AACCGGAA__X_X
5._CC_41___
______AG__________CCGGAA__X_X
6._CC_41___
______AG__________CCGGAA__X_X
7._MAR_1___
GGAATTAAAAAACCCCAACCGGAATTX_X
8._MAR_10___
GGAATTAAAAAACCCCAACCGGAATTX_X
9._MAR_13___
GGAATTAAAAAACCCCAACCGGAATTX_X
10._MAR_14___
GGAATTAAAAAACCCCAACCGGAATTX_X
11._MAR_21___
GGAATTAAAAAACCCCAACCGGAATTX_X
12._MAR_22___
GGAATTAAAAAACCCCAACCGGAATTX_X
13._MAR_9___
GGAATTAAAAAACCCCAACCGGAATTX_X
14._AMAZ_5_/2___
GGAATTGGAAAACCCCAACCGGAATTX_X
15._MAR_1___
GGAATTAAAAAACCCCAACCGGAATTX_X
16._MAR_20___
GGAATTAAAAAACCCCAACCGGAATTX_X
17._PA_167_[PER]___
GGAATTAGAAAACCCCAACCGGAATTX_X
18._BE_10___
__AATTGGAAAACCCC__CCGGAATTX_X
19._SIAL_70___
GGAATTGGAAAACCCCAACCGGAGTTX_X
20._JA_9_/37_[POU]___
GGAATTAGAAAACCCCAACCGGAATTX_X

Input profile: MARPER_22

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 475
 Dapeng Zhang, 2014

1._MAR_11

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B252 T2
 Dapeng Zhang, 2014

2._MAR_12

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B268 T2
 Dapeng Zhang, 2014

3._MAR_17

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B221 T1
 Dapeng Zhang, 2014

4._LCT_EEN_90_/S-7

94 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 178 T1
 Dapeng Zhang, 2014

5._CC_41 RUQ_1428

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._CC_41 RUQ_1428

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._MAR_1

92.6 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

8._MAR_10

92.6 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B243 T1
 Dapeng Zhang, 2014

9._MAR_13

92.6 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B189 T1
 Dapeng Zhang, 2014

10._MAR_14

92.6 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B207 T1
 Dapeng Zhang, 2014

11._MAR_21

92.6 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B267 T2
 Dapeng Zhang, 2014

12._MAR_22

92.6 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B190 T1
 Dapeng Zhang, 2014

13._MAR_9

92.6 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B220 T3
 Dapeng Zhang, 2014

14._AMAZ_5_/2

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

15._MAR_1

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

16._MAR_20

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

17._PA_167_[PER]

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 736
 Dapeng Zhang, 2014

18._BE_10

90.9 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

19._SIAL_70

90.4 %
26 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._JA_9_/37_[POU]

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E394 T8
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520