SNP Profiles matching OC 61 [VEN]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATGTAGCTGGAGCCTTCCTTGGGTTTCC
1._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
2._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
3._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
4._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
5._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
6._PA_70_[PER]___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
7._ICS_1___
ATGTAGCTGGAGCCTT__TTGGGT__CC
8._ICS_1___
ATGTAGCTGG__CCTTCCTTGGGT__CC
9._ICS_1___
__GTAGCT__AGCCTTCCTT__GT__CC
10._ICS_5___
__GTAGCT__AGCCTTCCTT__GT__CC
11._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
12._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
13._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
14._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
15._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
16._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
17._PA_70_[PER]___
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
18._ICS_1___
ATGTAGCTGGAGCCTT__TTGGGTGGCC
19._ICS_1___
ATGTAGCTGGAGCCCTCCCTGGGT__CC
20._CRU_124___
__GTAGCT__AGCCCTCCTT__GT__CC
21._CRU_124___
__GTAGCT__AGCCCTCCTT__GT__CC
22._MO_109___
__TTAGCC__AGCCTTCCTT__GT__CC
23._SNK_413___
__GTAGCT__AGCCTTCCTT__GG__CC
24._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
25._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
26._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
27._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
28._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
29._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
30._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
31._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
32._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
33._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
34._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
35._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
36._MARPER_34___
AAGTAGTTGGAGCCCTCCCTGGGTTTCC
37._MARPER_55___
ATGGAACCGGAGCCCTCCCTGGGTTTCC
38._EQX_/O_[CHA]___
TTGTGGCCGGAGCCTTCGTTGGGT__CC
39._EQX_/O_[CHA]___
TTGTGGCCGGAGCCTTCGTTGGGT__CC
40._EQX_/O_[CHA]___
TTGTGGCCGGAGCCTTCGTTGGGT__CC
41._EQX_/O_[CHA]___
TTGTGGCCGGAGCCTTCGTTGGGT__CC
42._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
43._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
44._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
45._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
46._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
47._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
48._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
49._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
50._OC_61_[VEN]___
TTTTAGCCGGAACCTTCCTTGGGG__CC
51._SGU_54___
TTGTAGCTGGAGCCCTCCTTAGGT__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27  
_Input profile
GGAATTAGAAAACTCCAACTGGAATTX_X
1._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
2._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
3._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
4._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
5._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
6._PA_70_[PER]___
GGAATTAGAAAACTCCAACTGGAATTX_X
7._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
8._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
9._ICS_1___
______AG__________CTGGAA__X_X
10._ICS_5___
______AG__________CTGGAA__X_X
11._ICS_1___
GGAATTAGAAAACTCCAACTGGAGTTX_X
12._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
13._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
14._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
15._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
16._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
17._PA_70_[PER]___
GGAATTAGAAAACTCCAACTGGAATTX_X
18._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
19._ICS_1___
GGAATTAGAAAACTCCAACTGGAGTTX_X
20._CRU_124___
______AG__________CTCGAA__X_X
21._CRU_124___
______AG__________CTCGAA__X_X
22._MO_109___
______AG__________CTGGAA__X_X
23._SNK_413___
______AG__________CTCGAA__X_X
24._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
25._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
26._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
27._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
28._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
29._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
30._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
31._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
32._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
33._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
34._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
35._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
36._MARPER_34___
GGAATTAGAAAACTCCAATTGGAATTX_X
37._MARPER_55___
GGAATTAGAAAACTCCAACTGGAATTX_X
38._EQX_/O_[CHA]___
GGAATTAGAAAACCCCAACTGGAATTX_X
39._EQX_/O_[CHA]___
GGAATTAGAAAACCCCAACTGGAATTX_X
40._EQX_/O_[CHA]___
GGAATTAGAAAACCCCAACTGGAATTX_X
41._EQX_/O_[CHA]___
GGAATTAGAAAACCCCAACTGGAATTX_X
42._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
43._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
44._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
45._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
46._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
47._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
48._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
49._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
50._OC_61_[VEN]___
GGAATTAGAAAACTCCAACTGGAATTX_X
51._SGU_54___
GGAATTAGAAAACTCCAACTCGAACTX_X

Input profile: MARPER_45

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

1._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

6._PA_70_[PER]

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

7._ICS_1

identical
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

8._ICS_1

identical
25 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

9._ICS_1 RUQ_847

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._ICS_5 RUQ_817

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._ICS_1 RUQ_847

98.1 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._PA_70_[PER] GC-04-053-3-17

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

18._ICS_1 NA

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

19._ICS_1 RUQ_847

94.2 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._CRU_124 RUQ_909

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._CRU_124 RUQ_909

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._MO_109 RUQ_1537

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._SNK_413 RUQ_854

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 6
 Dapeng Zhang, 2016

25._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 7
 Dapeng Zhang, 2016

26._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 8
 Dapeng Zhang, 2016

27._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 9
 Dapeng Zhang, 2016

28._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 10
 Dapeng Zhang, 2016

29._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 12
 Dapeng Zhang, 2016

30._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 14
 Dapeng Zhang, 2016

31._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 16
 Dapeng Zhang, 2016

32._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 17
 Dapeng Zhang, 2016

33._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 18
 Dapeng Zhang, 2016

34._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 2 > FP
 Dapeng Zhang, 2016

35._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 5 > FP
 Dapeng Zhang, 2016

36._MARPER_34

90.7 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 559
 Dapeng Zhang, 2014

37._MARPER_55

90.7 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

38._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7522 4 > FP
 Dapeng Zhang, 2016

39._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7522 2 > FP
 Dapeng Zhang, 2016

40._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7421 3
 Dapeng Zhang, 2016

41._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7421 1
 Dapeng Zhang, 2016

42._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

43._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

44._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

45._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

46._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016

47._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

48._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

49._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

50._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

51._SGU_54

90.4 %
26 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520