SNP Profiles matching MATINA 2 /8

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	TT	AC	GG	CT	AC	AA	CT	AA	GG	AA	CC	TT	GG
1._RUQ_691	_	_	AC	GG	CT	AC	AA	CT	AA	_	AA	CC	TT	GG
2._SPA_9_[COL]	GG	TT	AC	GG	CT	AC	AA	CT	AA	GG	AA	CC	TT	GG
3._MARPER_28	-	TT	-	GG	-	-	AA	CC	-	GG	AA	CC	TT	-
4._MARPER_38	-	TT	-	GG	-	-	AA	CC	-	GG	AA	CC	CT	-
5._NA_45	GG	TT	AC	GG	CT	AA	AG	CT	AA	GG	AA	CC	TT	GT
6._NA_45	GG	TT	AC	GG	_	AA	AG	CT	AA	GG	AA	CC	TT	GT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	AA	TT	CG	CC	CC	CC	GG	AA	TT	AG	CC
1._RUQ_691	GG	AA	CC	_	_	CG	CC	CC	_	_	_	_	AG	CC
2._SPA_9_[COL]	GG	AA	CC	AA	_	CG	_	CC	CC	GG	AA	TT	AG	CC
3._MARPER_28	GG	-	CC	AA	TT	-	-	CC	-	GG	AA	TT	GG	-
4._MARPER_38	GG	-	CC	AA	TT	-	-	CC	-	GG	AA	TT	GG	-
5._NA_45	GG	AA	CC	AA	_	CG	_	CC	CT	GG	AA	TT	AG	CC
6._NA_45	GG	AA	CC	AA	_	CG	_	CC	CT	GG	AA	TT	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	CT	CC	GT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
1._RUQ_691	_	_	_	_	GT	_	_	_	TT	CG	AA	_	X_X	X_X
2._SPA_9_[COL]	GG	AA	CC	CC	GT	TT	AC	TT	TT	CG	AA	CC	X_X	X_X
3._MARPER_28	AG	AA	-	CC	-	TT	AA	-	TT	CC	AA	CC	X_X	X_X
4._MARPER_38	AG	AA	-	CC	-	TT	AA	-	TT	CG	AA	CC	X_X	X_X
5._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X
6._NA_45	GG	AA	CC	CC	TT	CT	_	TT	TT	CG	AA	CC	X_X	X_X

Input profile: MATINA_2_/8

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B106 T16

Dapeng Zhang, 2014

1._SPA_16_[COL] RUQ_691

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._SPA_9_[COL]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

3._MARPER_28

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 647A

Dapeng Zhang, 2014

4._MARPER_38

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 167

Dapeng Zhang, 2014

5._NA_45

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 9

Dapeng Zhang, 2016

6._NA_45

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 14 > F

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP836	20	TcSNP872
21	TcSNP878	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520

SNP Profiles matching MATINA 2 /8

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Input profile: MATINA_2_/8

1._SPA_16_[COL] RUQ_691

identical 23 shared markers

2._SPA_9_[COL]

97.4 % 38 shared markers

3._MARPER_28

92.3 % 26 shared markers

4._MARPER_38

92.3 % 26 shared markers

5._NA_45

90.5 % 37 shared markers

6._NA_45

90.3 % 36 shared markers

identical
23 shared markers

97.4 %
38 shared markers

92.3 %
26 shared markers

92.3 %
26 shared markers

90.5 %
37 shared markers

90.3 %
36 shared markers