SNP Profiles matching PA 195 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GG	CC	AC	AG	CC	AA	GG	AA	AA	CC	GT
1._PA_52_[PER]___	GG	AT	AC	GG	CC	AC	AA	CC	AA	GG	AA	AA	CC	GT
2._MOQ_6_/95___	__	__	CC	GG	CC	AC	AG	CC	AA	__	AA	AC	CC	GT
3._MARPER_27___	__	AT	__	GG	__	__	GG	CC	__	GG	AA	AA	CC	__
4._PA_195_[PER]___	GG	AT	AC	GG	CC	CC	GG	CC	AA	GG	AA	AA	CC	GG
5._PA_195_[PER]___	GG	AT	AC	GG	CC	CC	GG	CC	AA	GG	AA	AA	CC	GG
6._PA_195_[PER]___	GG	AT	AC	GG	CC	CC	GG	CC	AA	GG	AA	AA	CC	GG
7._PA_56_[PER]___	__	__	CC	GG	CC	AC	AG	CC	AA	__	AA	AC	CT	GT
8._SLA_16___	__	__	AC	GG	CT	AC	AG	CC	AA	__	AA	AC	CT	GG
9._PA_53_[PER]___	GG	AT	CC	GG	CC	AC	AA	CC	AA	GG	AA	AA	CC	GT
10._PA_195_[PER]___	GG	AT	AC	GG	CC	CC	GG	CC	AA	GG	AA	AA	CC	GG
11._PA_195_[PER]___	GG	AT	AC	GG	CC	CC	GG	CC	AA	GG	AA	AA	CC	GG
12._PA_195_[PER]___	GG	AT	AC	GG	CC	CC	GG	CC	AA	GG	AA	AA	CC	GG
13._PA_195_[PER]___	GG	AT	AC	GG	CC	CC	GG	CC	AA	GG	AA	AA	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CG	CC	TT	AA	TT	GG	CC	CC	CC	CG	AA	CC	AG	CC
1._PA_52_[PER]___	CG	CC	TT	AA	TT	GG	CC	CC	CC	__	AA	__	AA	CC
2._MOQ_6_/95___	CG	CC	TT	__	__	GG	CC	CC	__	__	__	__	AG	CC
3._MARPER_27___	CG	__	TT	AA	TT	__	__	CC	__	CG	AA	CC	AG	__
4._PA_195_[PER]___	CG	CC	TT	AA	__	GG	__	CC	CC	CG	AA	CC	AG	CC
5._PA_195_[PER]___	CG	CC	TT	AA	__	GG	__	CC	CC	CG	AA	CC	AG	CC
6._PA_195_[PER]___	CG	CC	TT	AA	__	GG	__	CC	CC	CG	AA	CC	AG	CC
7._PA_56_[PER]___	CG	CC	TT	__	__	GG	CC	CC	__	__	__	__	AG	CC
8._SLA_16___	CG	CC	TT	__	__	GG	CC	CC	__	__	__	__	AG	CC
9._PA_53_[PER]___	CG	AC	TT	AA	TT	GG	CC	CC	CT	CG	AA	CC	AA	CC
10._PA_195_[PER]___	CG	CC	TT	AG	__	GG	__	CC	CC	CG	AA	CC	AG	CC
11._PA_195_[PER]___	CG	CC	TT	AG	__	GG	__	CC	CC	CG	AA	CC	AG	CC
12._PA_195_[PER]___	CG	CC	TT	AG	__	GG	__	CC	CC	CG	AA	CC	AG	CC
13._PA_195_[PER]___	CG	CC	TT	AG	__	GG	__	CC	CC	CG	AA	CC	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AA	CC	CC	TT	CT	CC	TT	CT	GG	GG	CC	X_X	X_X
1._PA_52_[PER]___	GG	AA	__	CC	TT	CT	__	TT	CT	GG	GG	CC	X_X	X_X
2._MOQ_6_/95___	__	__	__	__	TT	__	__	__	CC	GG	GG	__	X_X	X_X
3._MARPER_27___	AG	AA	__	CC	__	CC	CC	__	CC	CG	GG	CC	X_X	X_X
4._PA_195_[PER]___	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
5._PA_195_[PER]___	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
6._PA_195_[PER]___	AG	AA	__	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
7._PA_56_[PER]___	__	__	__	__	TT	__	__	__	CT	CG	GG	__	X_X	X_X
8._SLA_16___	__	__	__	__	TT	__	__	__	CT	GG	GG	__	X_X	X_X
9._PA_53_[PER]___	GG	AA	CC	CC	TT	CC	CC	TT	CT	GG	GG	CC	X_X	X_X
10._PA_195_[PER]___	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
11._PA_195_[PER]___	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
12._PA_195_[PER]___	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X
13._PA_195_[PER]___	AG	AA	CC	CC	TT	CC	CC	TT	CC	CG	GG	CC	X_X	X_X

Input profile: PA_128_[PER]

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D272 T2

Dapeng Zhang, 2014

1._PA_52_[PER]

95.8 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D310 T8

Dapeng Zhang, 2014

2._MOQ_6_/95 RUQ_1436

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._MARPER_27

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 491A

Dapeng Zhang, 2014

4._PA_195_[PER] RUQ_1642

92.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._PA_195_[PER] RUQ_1642

92.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._PA_195_[PER]

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B C165 T1

Dapeng Zhang, 2016

7._PA_56_[PER] RUQ_32

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._SLA_16 RUQ_1092

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._PA_53_[PER]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 243

Dapeng Zhang, 2014

10._PA_195_[PER]

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 4

Dapeng Zhang, 2016

11._PA_195_[PER]

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 1 > FP

Dapeng Zhang, 2016

12._PA_195_[PER]

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 2 > FP

Dapeng Zhang, 2016

13._PA_195_[PER]

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 5 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP836	20	TcSNP872
21	TcSNP878	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520