SNP Profiles matching PA 200 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCTACAGCCAAGGAAAACCGT
1._PA_7_[PER]___
GGATAAGGCTACAGCCAAGGAAAACCGT
2._PA_7_[PER]___
____AAGGCTACAGCCAA__AAAACCGT
3._PA_7_[PER]___
GGATAAGGCTACAGCCAAGGAAAACCGT
4._PA_7_[PER]___
GGATAAGGCTACAGCCAAGGAAAACCGT
5._PA_7_[PER]___
GGATAAGGCTACAGCCAAGGAAAACCGT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGCCCTAATTGGCCCCCTCCAACTAGCC
1._PA_7_[PER]___
GGCCTTAA__GG__CCCCCCAACCAGCC
2._PA_7_[PER]___
GGCCTT____GGCCCC________AGCC
3._PA_7_[PER]___
GGCCTTAG__GG__CCCCCCAACCAGCC
4._PA_7_[PER]___
GGCCTTAG__GG__CCCCCCAACCAGCC
5._PA_7_[PER]___
GGCCTTAG__GG__CCCCCCAACCAGCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCTTCTCCTTCTCGAGCTX_XX_X
1._PA_7_[PER]___
GGAACCCCTTCTCCTTCTCGAGCTX_XX_X
2._PA_7_[PER]___
________TT______CTCGAG__X_XX_X
3._PA_7_[PER]___
GGAACCCCTTCTCCTTCTCGAGCTX_XX_X
4._PA_7_[PER]___
GGAACCCCTTCTCCTTCTCGAGCTX_XX_X
5._PA_7_[PER]___
GGAACCCCTTCTCCTTCTCGAGCTX_XX_X

Input profile: PA_200_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 710
 Dapeng Zhang, 2014

1._PA_7_[PER] RUQ_113

92.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_7_[PER] RUQ_113

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_7_[PER]

90.8 %
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

4._PA_7_[PER]

90.8 %
38 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

5._PA_7_[PER]

90.8 %
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520