SNP Profiles matching PA 56 [PER]**

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGTCCACAGCCAAGGAAACCTGT
1._PA_72_[PER]___
GGAAACGTCCACAGCCAAGGAAACCTGT
2._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
3._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
4._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
5._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
6._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
7._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
8._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
9._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
10._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
11._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
12._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
13._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
14._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
15._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
16._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
17._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
18._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
19._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
20._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
21._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
22._PA_41_[PER]___
GGAAACGTCCACAGCCAAGGAGACCTGT
23._PA_56_[PER]___
GGAACCGGCCACAGCCAAGGAAACCTGT
24._PA_56_[PER]___
GGAACCGGCCACAGCCAAGGAAACCTGT
25._CRUZ_7_/14___
____ACGGCCAAAGCCAA__AAACCTGT
26._PA_56_[PER]___
____CCGGCCACAGCCAA__AAACCTGT
27._PA_71_[PER]___
____ACGGCCAAAGCCAA__AAACCTGT
28._SLA_16___
____ACGGCTACAGCCAA__AAACCTGG
29._PA_32_[PER]___
GGAAACGTCCACGGCCAAGGAAACCTGT
30._MO_9___
GGAAACGTCCACAACCAAGGAACCCTGT
31._MO_9___
GGAAACGTCC__AACCAAGGAACCCTGT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGCCTTAATTGGCCCCCTGGAACTAGCC
1._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
2._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
3._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
4._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
5._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
6._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
7._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
8._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
9._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
10._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
11._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
12._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
13._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
14._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
15._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
16._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
17._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
18._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
19._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
20._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
21._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
22._PA_41_[PER]___
CGCCTTAATTGGCCCCCCGGAACTAGCC
23._PA_56_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
24._PA_56_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
25._CRUZ_7_/14___
CGCCTT____GGCCCC________AGCC
26._PA_56_[PER]___
CGCCTT____GGCCCC________AGCC
27._PA_71_[PER]___
CGCCTT____GGCCCC________AGCC
28._SLA_16___
CGCCTT____GGCCCC________AGCC
29._PA_32_[PER]___
CGCCTTAATTGGCCCCCCCGAACTAACC
30._MO_9___
GGCCTTAA__GG__CCCTCGAACTAGCC
31._MO_9___
GGCCTTAA__GG__CCCTCGAACTAGCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
1._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
2._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
3._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
4._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
5._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
6._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
7._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
8._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
9._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
10._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
11._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
12._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
13._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
14._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
15._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
16._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
17._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
18._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
19._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
20._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
21._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
22._PA_41_[PER]___
GGAACCCCTTCTACTTCCGGAGCCX_XX_X
23._PA_56_[PER]___
GGAACCCCTTCCACTTCTCGGGCCX_XX_X
24._PA_56_[PER]___
GGAACCCCTTCCACTTCTCGGGCCX_XX_X
25._CRUZ_7_/14___
________TT______CCCGAG__X_XX_X
26._PA_56_[PER]___
________TT______CTCGGG__X_XX_X
27._PA_71_[PER]___
________TT______CCCGAG__X_XX_X
28._SLA_16___
________TT______CTGGGG__X_XX_X
29._PA_32_[PER]___
AGAACCCCTTCTACTTCTGGAGCCX_XX_X
30._MO_9___
GGAACCCCTTCCACTTCTCGGGCCX_XX_X
31._MO_9___
GGAACCCCTTCCACTTCTCGGGCCX_XX_X

Input profile: PA_72_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

1._PA_72_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

2._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

3._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

4._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

5._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

6._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

7._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

8._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

9._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

10._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

11._PA_72_[PER]

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._PA_41_[PER]

93.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

23._PA_56_[PER] RUQ_32

93.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._PA_56_[PER]

93.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

25._CRUZ_7_/14 RUQ_1569

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_56_[PER] RUQ_32

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_71_[PER] RUQ_1564

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._SLA_16 RUQ_1092

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._PA_32_[PER]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 253
 Dapeng Zhang, 2014

30._MO_9

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

31._MO_9

90.5 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520