SNP Profiles matching HUALLAGA 15

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_Input profile	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
1._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
2._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
3._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
4._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
5._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
6._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
7._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
8._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
9._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
10._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
11._HUALLAGA_15	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
12._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
13._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
14._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
15._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
16._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
17._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
18._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
19._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
20._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
21._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
22._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
23._GC-01-025-2-02	CC	AA	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
24._HUALLAGA_15	CC	AG	GG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
25._HUALLAGA_56	CC	AA	GG	TT	_	CC	TT	GT	CC	CC	AT	GG	CC	AA
26._GC-01-030-2-07	CC	AA	GG	TT	_	CC	TT	GT	CC	CC	AT	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
1._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
2._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
3._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
4._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
5._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
6._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
7._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
8._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
9._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
10._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
11._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
12._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
13._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
14._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
15._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
16._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
17._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
18._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
19._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
20._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
21._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
22._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
23._GC-01-025-2-02	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
24._HUALLAGA_15	CT	AA	GG	CC	CT	GG	TT	AA	CC	AA	GG	CT	AC	AA
25._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
26._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
1._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
2._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
3._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
4._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
5._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
6._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
7._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
8._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
9._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
10._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
11._HUALLAGA_15	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
12._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
13._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
14._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
15._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
16._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
17._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
18._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
19._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
20._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
21._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
22._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
23._GC-01-025-2-02	AG	AA	CC	AG	CG	AA	CT	GG	CC	TT	GG	X_X	X_X	X_X
24._HUALLAGA_15	AG	AA	CC	AG	CG	AC	CT	GG	CC	TT	GG	X_X	X_X	X_X
25._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
26._GC-01-030-2-07	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X

Input profile: HUALLAGA_15

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Mars Center for Cocoa Science, Brazil

Location: 1202 3

Dapeng Zhang, 2016

1._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 8 > FP

Dapeng Zhang, 2016

2._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 6 > FP

Dapeng Zhang, 2016

3._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 4 > FP

Dapeng Zhang, 2016

4._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 1 > FP

Dapeng Zhang, 2016

5._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 14

Dapeng Zhang, 2016

6._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 12

Dapeng Zhang, 2016

7._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 11

Dapeng Zhang, 2016

8._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 10

Dapeng Zhang, 2016

9._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 9

Dapeng Zhang, 2016

10._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 5

Dapeng Zhang, 2016

11._HUALLAGA_15

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1202 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

16._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

18._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP4

19._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

20._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

21._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

22._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

23._HUALLAGA_15 GC-01-025-2-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

24._HUALLAGA_15

97.4 %
39 shared markers

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PERICT

Dapeng Zhang, 2016

25._HUALLAGA_56

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1207 1 > FP

Dapeng Zhang, 2016

26._HUALLAGA_56 GC-01-030-2-07

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25