SNP Profiles matching HUALLAGA 56

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_Input profile	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
1._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
2._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
3._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
4._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
5._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
6._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
7._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
8._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
9._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
10._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
11._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
12._GC-07-022-1-24	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
13._HUALLAGA_56	CC	AA	GG	TT	_	CC	TT	GT	CC	CC	AT	GG	CC	AA
14._HUALLAGA_56	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
15._GC-01-030-2-07	CC	AA	GG	TT	_	CC	TT	GT	CC	CC	AT	GG	CC	AA
16._GC-01-030-2-07	CC	AA	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
17._HUALLAGA_56	CC	AG	GG	TT	TT	CC	TT	GT	CC	CC	AT	GG	CC	AA
18._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
19._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
1._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
2._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
3._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
4._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
5._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
6._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
7._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
8._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
9._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
10._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
11._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
12._GC-07-022-1-24	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
13._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
14._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
15._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
16._GC-01-030-2-07	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
17._HUALLAGA_56	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	AC	AA
18._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	CC	AA
19._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	CC	CC	AA

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_Input profile	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
1._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
2._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
3._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
4._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
5._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
6._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
7._GC-01-030-2-07	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
8._GC-01-030-2-07	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
9._GC-01-030-2-07	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
10._GC-01-030-2-07	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
11._GC-01-030-2-07	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
12._GC-07-022-1-24	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
13._HUALLAGA_56	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
14._HUALLAGA_56	GG	AA	CT	AG	CG	_	CC	GG	CC	TT	GG	X_X	X_X	X_X
15._GC-01-030-2-07	GG	AA	CT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
16._GC-01-030-2-07	GG	AA	CT	AG	CG	_	CC	GG	CC	TT	GG	X_X	X_X	X_X
17._HUALLAGA_56	GG	AA	TT	AG	CG	AA	CC	GG	CC	TT	GG	X_X	X_X	X_X
18._HUALLAGA_48	GG	AA	CT	AG	_	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
19._GC-01-009-1-09	GG	AA	CT	AG	_	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X

Input profile: HUALLAGA_56

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Mars Center for Cocoa Science, Brazil

Location: 1207 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._HUALLAGA_56

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7124 4 > FP

Dapeng Zhang, 2016

2._HUALLAGA_56

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7124 1 > FP

Dapeng Zhang, 2016

3._HUALLAGA_56

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1207 13 > F

Dapeng Zhang, 2016

4._HUALLAGA_56

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1207 14

Dapeng Zhang, 2016

5._HUALLAGA_56

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1207 10

Dapeng Zhang, 2016

6._HUALLAGA_56

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1207 9

Dapeng Zhang, 2016

7._HUALLAGA_56 GC-01-030-2-07

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

8._HUALLAGA_56 GC-01-030-2-07

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

9._HUALLAGA_56 GC-01-030-2-07

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

10._HUALLAGA_56 GC-01-030-2-07

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP2

11._HUALLAGA_56 GC-01-030-2-07

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

12._HUALLAGA_56 GC-07-022-1-24

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._HUALLAGA_56

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1207 1 > FP

Dapeng Zhang, 2016

14._HUALLAGA_56

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1207 15

Dapeng Zhang, 2016

15._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

16._HUALLAGA_56 GC-01-030-2-07

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

17._HUALLAGA_56

97.4 %
39 shared markers

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PERICT

Dapeng Zhang, 2016

18._HUALLAGA_48

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1107 5

Dapeng Zhang, 2016

19._HUALLAGA_48 GC-01-009-1-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25