SNP Profiles matching OC 61 [VEN]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._PA_70_[PER]___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._PA_70_[PER]___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._ICS_1___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
15._MARPER_45___	TT	AA	GG	CT	__	AA	CC	__	CT	__	AA	AA	__	AG
16._ICS_1___	TT	AG	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
17._ICS_1___	__	AA	GG	CT	__	__	__	TT	__	__	__	__	TT	AG
18._ICS_5___	__	AA	GG	CT	__	__	__	TT	__	__	__	__	TT	AG
19._ICS_1___	TT	AG	GG	CT	TT	AA	CC	TT	CT	CT	AA	AA	TT	AG
20._OC_61_[VEN]___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
21._OC_61_[VEN]___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
22._OC_61_[VEN]___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
23._OC_61_[VEN]___	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
24._MARPER_34___	TT	AA	GG	TT	__	AA	CC	__	CT	__	AA	AA	__	AG
25._MARPER_55___	TT	AA	GG	CT	__	AA	CC	__	CT	__	AA	AA	__	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
1._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
2._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
3._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
4._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
5._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
6._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
7._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
8._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
9._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
10._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
11._PA_70_[PER]___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
12._PA_70_[PER]___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
13._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	__	TT	TT	CC	GG
14._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	__	TT	TT	CC	GG
15._MARPER_45___	TT	AA	GG	__	CC	GT	GG	TT	__	CC	__	TT	CC	GG
16._ICS_1___	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
17._ICS_1___	__	__	__	__	CC	GT	__	TT	AA	CC	TT	TT	CC	__
18._ICS_5___	__	__	__	__	CC	GT	__	TT	AA	CC	TT	TT	CC	__
19._ICS_1___	TT	AA	GG	TT	CC	GT	GG	CT	AC	CC	TT	CT	CC	GG
20._OC_61_[VEN]___	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
21._OC_61_[VEN]___	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
22._OC_61_[VEN]___	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
23._OC_61_[VEN]___	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
24._MARPER_34___	TT	AA	GG	__	CC	GT	GG	CT	__	CC	__	CT	CC	GG
25._MARPER_55___	TT	AA	GG	__	CC	GT	GG	CT	__	CC	__	CT	CC	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
1._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
2._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
3._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
4._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
5._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
6._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
7._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
8._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
9._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
10._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
11._PA_70_[PER]___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
12._PA_70_[PER]___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
13._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
14._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
15._MARPER_45___	__	CT	AG	__	__	__	GT	__	AT	__	X_X	X_X	X_X	X_X
16._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
17._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	__	__	X_X	X_X	X_X	X_X
18._ICS_5___	AT	CT	AG	CG	AA	CC	GT	AA	__	__	X_X	X_X	X_X	X_X
19._ICS_1___	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
20._OC_61_[VEN]___	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
21._OC_61_[VEN]___	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
22._OC_61_[VEN]___	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
23._OC_61_[VEN]___	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
24._MARPER_34___	__	TT	AG	__	__	__	GT	__	AA	__	X_X	X_X	X_X	X_X
25._MARPER_55___	__	CC	AA	__	__	__	GG	__	AT	__	X_X	X_X	X_X	X_X

Input profile: ICS_1

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

1._ICS_1

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

3._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

4._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

5._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

6._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._PA_70_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

12._PA_70_[PER] GC-04-053-3-17

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

13._ICS_1

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

14._ICS_1 NA

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

15._MARPER_45

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_1 RUQ_847

94.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._OC_61_[VEN]

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5139 1 > FP

Dapeng Zhang, 2016

21._OC_61_[VEN]

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 2

Dapeng Zhang, 2016

22._OC_61_[VEN] GC-05-039-1-39

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

23._OC_61_[VEN] GC-05-039-1-39

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

24._MARPER_34

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 559

Dapeng Zhang, 2014

25._MARPER_55

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 249

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25