SNP Profiles matching IMC 2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AGCGTTCCTTGGCCAAGGCCAATTAACC
1._LP_4_/20_[POU]___
AGCGTT____GG______CCAA______
2._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
3._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
4._IMC_14___
AGCGTTCCTT__CCAAGGCTAATTAACC
5._IMC_14___
AGCGTTCCTT__CCAAGGCTAATTAACC
6._IMC_14___
AGCGTTCCTT__CCAAGGCTAATTAACC
7._IMC_14___
AGCGTTCCTT__CCAAGGCTAATTAACC
8._IMC_14___
AGCGTTCCTT__CCAAGGCTAATTAACC
9._IMC_14___
AGCGTTCCTT__CCAAGGCTAATTAACC
10._IMC_14___
AGCGTT__TT__CCAAGGCTAATTAACC
11._IMC_14___
AGCGTT__TT__CCAAGGCTAATTAACC
12._IMC_14___
AGCGTT__TT__CCAAGGCTAATTAACC
13._IMC_14___
AGCGTT__TT__CCAAGGCTAATTAACC
14._IMC_14___
AGCGTT__TT__CCAAGGCTAA__AACC
15._IMC_14___
AGCGTT__TT__CCAAGGCTAA__AACC
16._MARPER_48___
AGCGTTCCTT__CCAAGG__AATTAA__
17._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
18._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
19._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
20._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
21._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
22._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
23._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
24._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
25._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
26._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
27._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
28._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
29._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
30._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
31._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
32._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
33._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
34._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
35._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
36._IMC_60___
AGCGTT____GG______CTAA______
37._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
38._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
39._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
40._IMC_11___
AGCGTTCCTTGTCCAAGGCTAATTAACC
41._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
42._IMC_14___
AGCGTTCCTTGTCCAAGGCTAATTAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTCCGGAACCAAGGGGCTCCAAGGAACT
1._LP_4_/20_[POU]___
TTCCGG__CCAAGGGTCTCCAA__AACT
2._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
3._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
4._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
5._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
6._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
7._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
8._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
9._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
10._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
11._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
12._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
13._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
14._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
15._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
16._MARPER_48___
CT__GGAACC__GG__CTACAAGG__TT
17._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
18._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
19._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
20._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
21._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
22._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
23._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
24._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
25._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
26._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
27._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
28._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
29._IMC_11___
CCCCGGAACCAAGGGGCTCCAAGGAATT
30._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
31._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
32._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
33._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
34._IMC_14___
CCCCGGAACCAAGGGGCTCCAAGGAATT
35._IMC_11___
CCCCGGAACCAAGGGGCTCCAAAGAATT
36._IMC_60___
TTCCGG__CCAACGGGCTCCAA__AACT
37._IMC_11___
CCCCGGAACCAAGGGGCT__AAGGAATT
38._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
39._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
40._IMC_11___
CCCCGGAACCAAGGGGCT__AAGGAATT
41._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
42._IMC_14___
CCCCGG__CCAAGGGGCTCCAAGGAATT
 29 30 31 32 33 34         
_Input profile
ACCTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
1._LP_4_/20_[POU]___
ACCTTTCC____X_XX_XX_XX_XX_XX_XX_XX_X
2._IMC_11___
ACCTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
3._IMC_14___
ACCTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
4._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
5._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
6._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
7._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
8._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
9._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
10._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
11._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
12._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
13._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
14._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
15._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
16._MARPER_48___
____GT__AT__X_XX_XX_XX_XX_XX_XX_XX_X
17._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
18._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
19._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
20._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
21._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
22._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
23._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
24._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
25._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
26._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
27._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
28._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
29._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
30._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
31._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
32._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
33._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
34._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
35._IMC_11___
ACCTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
36._IMC_60___
ACCCTTAC____X_XX_XX_XX_XX_XX_XX_XX_X
37._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
38._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
39._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
40._IMC_11___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
41._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
42._IMC_14___
AACTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_2

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A41 T8
 Dapeng Zhang, 2016

1._LP_4_/20_[POU] RUQ_1676

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_11

92.6 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

3._IMC_14

92.6 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

4._IMC_14

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

5._IMC_14

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

6._IMC_14 GC-03-030-3-09

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._IMC_14 GC-03-030-3-09

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._IMC_14

92.2 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

9._IMC_14 GC-03-030-3-09

92.2 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._IMC_14

91.9 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

11._IMC_14

91.9 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

12._IMC_14 GC-03-030-3-09

91.9 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._IMC_14 GC-03-030-3-09

91.9 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._IMC_14

91.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

15._IMC_14 GC-03-030-3-09

91.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._MARPER_48

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 758A
 Dapeng Zhang, 2014

17._IMC_11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

18._IMC_11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

19._IMC_11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

20._IMC_11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016

21._IMC_14

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

22._IMC_14

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

23._IMC_14

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

24._IMC_14

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

25._IMC_14

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016

26._IMC_11 GC-04-029-2-11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

27._IMC_11 GC-04-029-2-11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

28._IMC_11 GC-04-029-2-11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

29._IMC_11 GC-04-029-2-11

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

30._IMC_14 GC-03-030-3-09

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

31._IMC_14 GC-03-030-3-09

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._IMC_14 GC-03-030-3-09

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

33._IMC_14 GC-03-030-3-09

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

34._IMC_14 GC-04-054-3-18

91.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

35._IMC_11 RUQ_8

91.2 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

36._IMC_60 RUQ_1617

90.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._IMC_11

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 2 > FP
 Dapeng Zhang, 2016

38._IMC_14

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

39._IMC_14

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

40._IMC_11 GC-04-029-2-11

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

41._IMC_14 GC-03-030-3-09

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

42._IMC_14 GC-03-030-3-09

90.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1075 9TcSNP1062 10TcSNP1060
11TcSNP998 12TcSNP994 13TcSNP953 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP193 30TcSNP151
31TcSNP150 32TcSNP144 33TcSNP32 34TcSNP25