SNP Profiles matching IMC 47

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_Input profile	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
1._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
2._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
3._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
4._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
5._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
6._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
7._MARPER_42___	CC	GG	CG	CC	__	CC	__	CC	__	AA	GG	__	AG	CT
8._MO_4___	__	GG	CG	CC	__	__	TT	__	__	__	__	CC	AG	__
9._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
10._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
11._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
12._IMC_41___	CC	GG	CG	CC	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
13._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
14._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
15._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
16._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
17._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
18._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
19._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
20._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
21._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
22._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
23._MO_9___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
24._PA_56_[PER]___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT
25._PA_56_[PER]___	CC	GG	CG	CT	TT	CC	TT	CC	CC	AA	GG	CC	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
1._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
2._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
3._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
4._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
5._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
6._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
7._MARPER_42___	AA	GG	__	CC	__	GG	AA	TT	GG	__	CC	AA	AA	GG
8._MO_4___	__	__	__	CC	GG	GG	__	TT	GG	GT	CC	AA	AA	__
9._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
10._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
11._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
12._IMC_41___	AA	GG	CT	CC	GG	GG	AA	TT	GG	GT	CC	AA	AA	GG
13._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
14._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
15._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
16._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
17._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
18._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
19._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
20._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
21._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
22._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
23._MO_9___	AA	CG	CT	CC	GG	GG	AA	TT	GG	GT	CT	CC	AA	GG
24._PA_56_[PER]___	AA	GG	CT	CC	GG	GG	AA	TT	CG	GT	CT	AC	AA	GG
25._PA_56_[PER]___	AA	GG	CT	CC	GG	GG	AA	TT	CG	GT	CT	AC	AA	GG

	29	30	31	32	33	34	35	36	37
_Input profile	AA	CC	AA	AC	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
1._IMC_41___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
2._IMC_41___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
3._IMC_41___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
4._IMC_41___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
5._IMC_41___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
6._IMC_41___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
7._MARPER_42___	__	CC	AA	__	__	GT	__	AA	__	X_X	X_X	X_X	X_X	X_X
8._MO_4___	AA	CC	AA	AC	CC	GT	AC	__	__	X_X	X_X	X_X	X_X	X_X
9._IMC_41___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
10._IMC_41___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
11._IMC_41___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
12._IMC_41___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
13._MO_9___	AA	CC	AA	AC	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
14._MO_9___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
15._MO_9___	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
16._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
17._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
18._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
19._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
20._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
21._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
22._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
23._MO_9___	AA	CC	AA	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X	X_X	X_X
24._PA_56_[PER]___	AA	CC	AG	AC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
25._PA_56_[PER]___	AA	CC	AG	AC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_41

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F418 T1

Dapeng Zhang, 2016

1._IMC_41

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 3

Dapeng Zhang, 2016

2._IMC_41

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 2

Dapeng Zhang, 2016

3._IMC_41

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 1

Dapeng Zhang, 2016

4._IMC_41 GC-08-275-8-47

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._IMC_41 GC-08-275-8-47

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._IMC_41 GC-08-275-8-47

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._MARPER_42

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 713

Dapeng Zhang, 2014

8._MO_4 RUQ_1529

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._IMC_41

98.6 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 5

Dapeng Zhang, 2016

10._IMC_41

98.6 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 4

Dapeng Zhang, 2016

11._IMC_41 GC-08-275-8-47

98.6 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._IMC_41 GC-08-275-8-47

98.6 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._MO_9

93.2 %
37 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D835

Dapeng Zhang, 2016

14._MO_9

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5321 3 > FP

Dapeng Zhang, 2016

15._MO_9 GC-05-119-3-21

93.1 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

16._MO_9

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 4 > FP

Dapeng Zhang, 2016

17._MO_9

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 2

Dapeng Zhang, 2016

18._MO_9

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 1 > FP

Dapeng Zhang, 2016

19._MO_9

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 5

Dapeng Zhang, 2016

20._MO_9 GC-05-071-2-22

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

21._MO_9 GC-05-071-2-22

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

22._MO_9 GC-05-119-3-21

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

23._MO_9 GC-05-119-3-21

91.9 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

24._PA_56_[PER] RUQ_32

90.5 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

25._PA_56_[PER]

90.5 %
37 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP193	33	TcSNP151	34	TcSNP150	35	TcSNP144
36	TcSNP32	37	TcSNP25