SNP Profiles matching IMC 47

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
1._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
2._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
3._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
4._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
5._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
6._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
7._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
8._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
9._IMC_41___	CC	GG	CG	CC	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
10._IMC_41___	CC	GG	CG	CC	TT	__	CC	TT	CC	CC	AA	GG	CC	AG
11._MARPER_42___	CC	GG	CG	CC	__	AC	CC	__	CC	__	AA	GG	__	AG
12._MO_4___	__	GG	CG	CC	__	__	__	TT	__	__	__	__	CC	AG
13._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
14._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
15._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
16._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
17._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
18._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
19._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
20._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
21._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
22._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
23._MO_9___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
1._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
2._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
3._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
4._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
5._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
6._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
7._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
8._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
9._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	AC	GG	GT	CC	AA
10._IMC_41___	CT	AA	GG	CT	CC	GG	GG	AA	TT	__	GG	GT	CC	AA
11._MARPER_42___	CT	AA	GG	__	CC	__	GG	AA	TT	__	GG	__	CC	AA
12._MO_4___	__	__	__	__	CC	GG	GG	__	TT	AC	GG	GT	CC	AA
13._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
14._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
15._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
16._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
17._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
18._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
19._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
20._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
21._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
22._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
23._MO_9___	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
1._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
2._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
3._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
4._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
5._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
6._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
7._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
8._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
9._IMC_41___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
10._IMC_41___	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X
11._MARPER_42___	AA	GG	__	CC	AA	__	__	GT	__	AA	__	X_X	X_X	X_X
12._MO_4___	AA	__	AA	CC	AA	CC	CC	GT	AC	__	__	X_X	X_X	X_X
13._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
14._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
15._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
16._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
17._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
18._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
19._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
20._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
21._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
22._MO_9___	AA	GG	AA	CC	AA	CC	CC	GT	AC	AA	GG	X_X	X_X	X_X
23._MO_9___	AA	GG	AA	CC	AA	__	CC	GT	AC	AA	GG	X_X	X_X	X_X

Input profile: IMC_41

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Mars Center for Cocoa Science, Brazil

Location: 8847 2

Dapeng Zhang, 2016

1._IMC_41

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 5

Dapeng Zhang, 2016

2._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 4

Dapeng Zhang, 2016

3._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 3

Dapeng Zhang, 2016

4._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 1

Dapeng Zhang, 2016

5._IMC_41 GC-08-275-8-47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._IMC_41 GC-08-275-8-47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._IMC_41 GC-08-275-8-47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._IMC_41 GC-08-275-8-47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._IMC_41 GC-08-275-8-47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._IMC_41

identical
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F418 T1

Dapeng Zhang, 2016

11._MARPER_42

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 713

Dapeng Zhang, 2014

12._MO_4 RUQ_1529

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._MO_9

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5321 4 > FP

Dapeng Zhang, 2016

14._MO_9

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 3 > FP

Dapeng Zhang, 2016

15._MO_9

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 2

Dapeng Zhang, 2016

16._MO_9

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 1 > FP

Dapeng Zhang, 2016

17._MO_9

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 5

Dapeng Zhang, 2016

18._MO_9 GC-05-071-2-22

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

19._MO_9 GC-05-071-2-22

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

20._MO_9 GC-05-119-3-21

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

21._MO_9 GC-05-119-3-21

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

22._MO_9 GC-05-119-3-21

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

23._MO_9

92.1 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D835

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25