SNP Profiles matching BE 8

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	TT	CT	CC	TT	TT	CC	CC	AA	AG	TT	AA
1._LCT_EEN_162_/S-1010___	__	GG	CG	TT	__	__	__	TT	__	__	__	__	TT	AA
2._LCT_EEN_162_/S-1010___	__	GG	CG	TT	__	__	__	TT	__	__	__	__	TT	AA
3._LCT_EEN_162_/S-1010___	CC	GG	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	TT	AA
4._LCT_EEN_162_/S-1010___	CC	GG	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	TT	AA
5._LCT_EEN_162_/S-1010___	CC	__	CG	TT	TT	CC	__	TT	CC	CT	__	AG	TT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AT	GG	CT	CC	CG	GG	AA	CT	AC	CG	GT	CC	CC
1._LCT_EEN_162_/S-1010___	__	__	__	__	CC	CG	GG	__	CT	AC	CG	GT	CC	CC
2._LCT_EEN_162_/S-1010___	__	__	__	__	CC	CG	GG	__	CT	AC	CG	GT	CC	CC
3._LCT_EEN_162_/S-1010___	CC	AT	GG	CT	CC	CG	GG	AA	CT	AC	CG	GT	CC	CC
4._LCT_EEN_162_/S-1010___	CC	AT	GG	CT	CC	CG	GG	AA	CT	AC	CG	GT	CC	CC
5._LCT_EEN_162_/S-1010___	CC	AT	GG	CT	CC	CG	GG	AA	CT	AC	CG	GT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	TT	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
1._LCT_EEN_162_/S-1010___	AA	__	AA	TT	AG	CC	AA	CT	GG	AA	__	__	X_X	X_X
2._LCT_EEN_162_/S-1010___	AA	__	AA	TT	AG	CC	AA	CT	GG	AA	__	__	X_X	X_X
3._LCT_EEN_162_/S-1010___	AA	GG	AA	TT	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
4._LCT_EEN_162_/S-1010___	AA	AG	AA	TT	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
5._LCT_EEN_162_/S-1010___	AA	GG	AA	CT	AG	__	AA	CT	GG	AA	AT	GG	X_X	X_X

Input profile: LCT_EEN_162_/S-1010 RUQ_686

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._LCT_EEN_162_/S-1010 RUQ_70

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LCT_EEN_162_/S-1010 RUQ_686

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LCT_EEN_162_/S-1010

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A60 T1

Dapeng Zhang, 2016

4._LCT_EEN_162_/S-1010 RUQ_70

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._LCT_EEN_162_/S-1010

95.8 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 60 T1

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles matching BE 8

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Input profile: LCT_EEN_162_/S-1010 RUQ_686

1._LCT_EEN_162_/S-1010 RUQ_70

identical 24 shared markers

2._LCT_EEN_162_/S-1010 RUQ_686

identical 24 shared markers

3._LCT_EEN_162_/S-1010

98.8 % 40 shared markers

4._LCT_EEN_162_/S-1010 RUQ_70

97.5 % 40 shared markers

5._LCT_EEN_162_/S-1010

95.8 % 36 shared markers

identical
24 shared markers

identical
24 shared markers

98.8 %
40 shared markers

97.5 %
40 shared markers

95.8 %
36 shared markers