SNP Profiles matching LCTEEN 241

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AT	GG	CC	AA
1._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AT	GG	CC	AA
2._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AT	GG	CC	AA
3._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AT	GG	CC	AA
4._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AT	GG	CC	AA
5._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AT	GG	CC	AA
6._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	_	TT	CC	AT	GG	CC	AA
7._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	_	TT	CC	AT	GG	CC	AA
8._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	_	GG	CC	AA
9._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	_	GG	CC	AA
10._RUQ_185	_	GG	CC	TT	_	_	_	GG	_	_	_	_	CC	AA
11._RUQ_185	CC	GG	CC	TT	TT	AA	TT	GG	CT	CC	AT	GG	CC	AA
12._RUQ_687	_	GG	CC	TT	_	_	_	GG	_	_	_	_	CC	AA
13._RUQ_1548	_	GG	CC	CT	_	_	_	GG	_	_	_	_	CC	AA
14._LCT_EEN_300	CC	-	CC	TT	TT	AA	TT	GG	TT	CC	-	GG	CC	AA
15._LCT_EEN_378	CC	-	CC	TT	TT	AC	TT	GG	TT	-	-	GG	CC	AA
16._LCT_EEN_108	-	GG	CC	TT	-	AA	-	GG	TT	-	AT	GG	CC	AA
17._LCT_EEN_73_/S	-	GG	CC	TT	-	AC	-	GG	TT	-	AT	GG	CC	AA
18._LCT_EEN_85	-	GG	CC	TT	-	CC	-	GG	TT	-	TT	GG	CC	AA
19._LCT_EEN_255	CC	GG	CC	TT	TT	AA	TT	GG	TT	-	AA	GG	CC	AA
20._LCT_EEN_146	-	GG	CC	TT	TT	AA	TT	GG	TT	-	AA	GG	CC	AA
21._LCT_EEN_327	CC	-	CC	TT	TT	AA	TT	GG	TT	CC	-	GG	CC	AA
22._LCT_EEN_57	CC	-	CC	TT	TT	AA	TT	GG	TT	CT	-	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
1._LCT_EEN_241	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
2._LCT_EEN_241	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
3._GC-08-269-8-41	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
4._GC-08-269-8-41	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
5._GC-08-269-8-41	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
6._LCT_EEN_241	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
7._GC-08-269-8-41	CT	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
8._LCT_EEN_241	CT	AT	CG	_	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
9._GC-08-269-8-41	CT	AT	CG	_	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
10._RUQ_185	_	_	_	_	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG
11._RUQ_185	CT	AT	CG	TT	CT	CG	GG	CT	CC	GG	GG	CC	AC	GG
12._RUQ_687	_	_	_	_	TT	CC	GG	TT	CC	GG	GG	CC	CC	GG
13._RUQ_1548	_	_	_	_	TT	CC	GG	TT	CC	-	GG	CC	AC	GG
14._LCT_EEN_300	CT	AA	CC	TT	TT	CC	GG	TT	CC	GG	GG	CC	CC	GG
15._LCT_EEN_378	TT	AT	CG	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG
16._LCT_EEN_108	CT	TT	CG	TT	TT	CC	GG	TT	CC	GG	GG	CC	AA	GG
17._LCT_EEN_73_/S	CT	AT	CG	TT	TT	CG	GT	CT	CC	CG	GG	CC	AA	GG
18._LCT_EEN_85	TT	AT	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
19._LCT_EEN_255	TT	AA	CG	TT	TT	CC	GG	CT	CC	GG	GG	CC	CC	GG
20._LCT_EEN_146	TT	AT	CC	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG
21._LCT_EEN_327	TT	AA	CC	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG
22._LCT_EEN_57	CT	AA	CG	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
1._LCT_EEN_241	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
2._LCT_EEN_241	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
3._GC-08-269-8-41	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
4._GC-08-269-8-41	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
5._GC-08-269-8-41	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
6._LCT_EEN_241	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
7._GC-08-269-8-41	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
8._LCT_EEN_241	AA	_	CC	AG	_	CC	TT	GG	AA	AA	_	X_X	X_X	X_X
9._GC-08-269-8-41	AA	_	CC	AG	_	CC	TT	GG	AA	AA	_	X_X	X_X	X_X
10._RUQ_185	_	TT	CC	AG	GG	CC	TT	GG	AA	_	_	X_X	X_X	X_X
11._RUQ_185	AA	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
12._RUQ_687	_	TT	CC	GG	-	CC	TT	GG	AA	_	_	X_X	X_X	X_X
13._RUQ_1548	_	TT	CC	GG	-	CC	TT	GG	AA	_	_	X_X	X_X	X_X
14._LCT_EEN_300	AA	TT	CC	GG	-	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
15._LCT_EEN_378	AA	TT	CC	GG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X
16._LCT_EEN_108	AG	TT	CC	AG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X
17._LCT_EEN_73_/S	AA	TT	CC	AG	-	CC	TT	GG	AA	AA	CG	X_X	X_X	X_X
18._LCT_EEN_85	AA	TT	CC	-	-	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X
19._LCT_EEN_255	AA	TT	CC	AG	-	CC	TT	GG	AC	AA	CC	X_X	X_X	X_X
20._LCT_EEN_146	AA	TT	CC	GG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X
21._LCT_EEN_327	AA	TT	CC	GG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X
22._LCT_EEN_57	AA	TT	CC	GG	-	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X

Input profile: LCT_EEN_241

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Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._LCT_EEN_241

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

2._LCT_EEN_241

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

3._LCT_EEN_241 GC-08-269-8-41

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._LCT_EEN_241 GC-08-269-8-41

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._LCT_EEN_241 GC-08-269-8-41

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._LCT_EEN_241

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

7._LCT_EEN_241 GC-08-269-8-41

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._LCT_EEN_241

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

9._LCT_EEN_241 GC-08-269-8-41

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._LCT_EEN_241 RUQ_185

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._LCT_EEN_241 RUQ_185

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._LCT_EEN_302 RUQ_687

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._LCT_EEN_341_/S-2 RUQ_1548

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._LCT_EEN_300

93.1 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N2/448 T1

Dapeng Zhang, 2014

15._LCT_EEN_378

91.4 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

16._LCT_EEN_108

91.2 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X16 Y3

Dapeng Zhang, 2014

17._LCT_EEN_73_/S

91.2 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X10 Y3

Dapeng Zhang, 2014

18._LCT_EEN_85

90.9 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D254 T3

Dapeng Zhang, 2014

19._LCT_EEN_255

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

20._LCT_EEN_146

90.3 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

21._LCT_EEN_327

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 61 T1

Dapeng Zhang, 2014

22._LCT_EEN_57

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25