SNP Profiles matching LCTEEN 241

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 1234567891011121314
_Input profile
CCGGCCTTTTAATTGGTTCCGGCCAACT
1._GC-08-269-8-41
CCGGCCTTTTAATTGGTTCCGGCCAACT
2._LCT_EEN_241
CCGGCCTTTTAATTGGTTCCGGCCAACT
3._LCT_EEN_241
CCGGCCTTTTAATTGGTTCCGGCCAACT
4._LCT_EEN_241
CCGGCCTTTTAATTGGTTCCGGCCAACT
5._GC-08-269-8-41
CCGGCCTTTTAATTGGTTCCGGCCAACT
6._GC-08-269-8-41
CCGGCCTTTTAATTGGTTCCGGCCAACT
7._GC-08-269-8-41
CCGGCCTTTTAATTGGTTCCGGCCAACT
8._LCT_EEN_241
CCGGCCTTTTAATT_TTCCGGCCAACT
9._GC-08-269-8-41
CCGGCCTTTTAATT_TTCCGGCCAACT
10._RUQ_185
_GGCCTT___GG___CCAA_
11._RUQ_185
CCGGCCTTTTAATTGGCTCCGGCCAACT
12._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
13._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
14._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
15._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
16._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
17._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
18._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
19._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCGGCCAACT
20._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
21._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
22._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
23._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
24._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
25._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
26._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
27._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCGGCCAACT
28._RUQ_687
_GGCCTT___GG___CCAA_
29._RUQ_1548
_GGCCCT___GG___CCAA_
30._LCT_EEN_223
CCGGCCTTTTAATTGGTT-GGCCAACT
31._LCT_EEN_146
-GGCCTTTTAATTGGTT-GGCCAATT
32._LCT_EEN_378
CC-CCTTTTACTTGGTT-GGCCAATT
33._LCT_EEN_108
-GGCCTT-AA-GGTT-GGCCAACT
34._LCT_EEN_63
-GGCCTT-AA-GGTT-GGCCAATT
35._LCT_EEN_85
-GGCCTT-CC-GGTT-GGCCAATT
36._LCT_EEN_280
CCGGCCTTTTACTTGGTTCCGGCCAACT
37._LCT_EEN_255
CCGGCCTTTTAATTGGTT-GGCCAATT
38._LCT_EEN_282
CCGGCCTTTTAATTGGTT-GGCCAATT
39._LCT_EEN_283
CCGGCCTTTTAATTGGTT-GGCCAACT
40._LCT_EEN_300
CC-CCTTTTAATTGGTTCCGGCCAACT
41._LCT_EEN_327
CC-CCTTTTAATTGGTTCCGGCCAATT
42._LCT_EEN_57
CC-CCTTTTAATTGGTTCTGGCCAACT
43._RUQ_153
_GGCGCT___GG___CCAA_
44._LCT_EEN_282
-GGCCTTTTAATTGGTT-GGCCAATT
45._LCT_EEN_73_/S
-GGCCTT-AC-GGTT-GGCCAACT
 1516171819202122232425262728
_Input profile
ATCGTTCGGGAGTTCCGGGGCCACGGAA
1._GC-08-269-8-41
ATCGTTCGGGAGTTCCGGGGCCACGGAA
2._LCT_EEN_241
ATCGTTCGGG_TTCCGGGGCCACGGAA
3._LCT_EEN_241
ATCGTTCGGG_TTCCGGGGCCACGGAA
4._LCT_EEN_241
ATCGTTCGGG_TTCCGGGGCCACGGAA
5._GC-08-269-8-41
ATCGTTCGGG_TTCCGGGGCCACGGAA
6._GC-08-269-8-41
ATCGTTCGGG_TTCCGGGGCCACGGAA
7._GC-08-269-8-41
ATCGTTCGGG_TTCCGGGGCCACGGAA
8._LCT_EEN_241
ATCGTTCGGG_TTCCGGGGCCACGGAA
9._GC-08-269-8-41
ATCGTTCGGG_TTCCGGGGCCACGGAA
10._RUQ_185
__TTCGGG_TTCCGGGGCCACGG_
11._RUQ_185
ATCGCTCGGGAGCTCCGGGGCCACGGAA
12._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
13._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
14._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
15._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
16._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
17._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
18._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
19._LCT_EEN_280
AACGTTCGGG_CTCCGGGGCCAAGGAA
20._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
21._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
22._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
23._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
24._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
25._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
26._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
27._GC-08-070-1-92
AACGTTCGGG_CTCCGGGGCCAAGGAA
28._RUQ_687
__TTCCGG_TTCCGGGGCCCCGG_
29._RUQ_1548
__TTCCGG_TTCC-GGCCACGG_
30._LCT_EEN_223
AACCTTCCGGAGTTCCGGGGCCAAGGAA
31._LCT_EEN_146
ATCCTTCCGGAATTCCGGGGCCACGGAA
32._LCT_EEN_378
ATCGTTCCGGAATTCCGGGGCCACGGAA
33._LCT_EEN_108
TTCGTTCCGGAATTCCGGGGCCAAGGAG
34._LCT_EEN_63
AACGTTCCGGGGTTCCGGGGCCACGGAA
35._LCT_EEN_85
ATCGTTCGGGAGCTCCGGGGCCAAGGAA
36._LCT_EEN_280
AACGTTCGGGGGCTCCGGGGCCAAGGAA
37._LCT_EEN_255
AACGTTCCGGAGCTCCGGGGCCCCGGAA
38._LCT_EEN_282
AACCTTCCGGAATTCCGGGGCCACGGAA
39._LCT_EEN_283
AACCTTCCGTAATTCCGGGGCCACGGAA
40._LCT_EEN_300
AACCTTCCGGGGTTCCGGGGCCCCGGAA
41._LCT_EEN_327
AACCTTCCGGAATTCCGGGGCCACGGAA
42._LCT_EEN_57
AACGTTCCGGAATTCCGGGGCCACGGAA
43._RUQ_153
__TTCGGG_TTCCCGGGCCACAG_
44._LCT_EEN_282
AACCTTCCGGAATTCCGGGGCCACGGAA
45._LCT_EEN_73_/S
ATCGTTCGGTGGCTCCCGGGCCAAGGAA
 29303132333435       
_Input profile
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
1._GC-08-269-8-41
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
2._LCT_EEN_241
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
3._LCT_EEN_241
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
4._LCT_EEN_241
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
5._GC-08-269-8-41
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
6._GC-08-269-8-41
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
7._GC-08-269-8-41
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
8._LCT_EEN_241
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
9._GC-08-269-8-41
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
10._RUQ_185
CCAGCCTTGGAA_X_XX_XX_XX_XX_XX_XX_X
11._RUQ_185
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
12._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
13._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
14._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
15._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
16._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
17._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
18._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
19._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
20._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
21._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
22._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
23._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
24._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
25._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
26._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
27._GC-08-070-1-92
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
28._RUQ_687
CCGGCCTTGGAA_X_XX_XX_XX_XX_XX_XX_X
29._RUQ_1548
CCGGCCTTGGAA_X_XX_XX_XX_XX_XX_XX_X
30._LCT_EEN_223
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
31._LCT_EEN_146
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
32._LCT_EEN_378
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
33._LCT_EEN_108
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
34._LCT_EEN_63
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
35._LCT_EEN_85
CC-CCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
36._LCT_EEN_280
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
37._LCT_EEN_255
CCAGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
38._LCT_EEN_282
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
39._LCT_EEN_283
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
40._LCT_EEN_300
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
41._LCT_EEN_327
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
42._LCT_EEN_57
CCGGCCTTGGACAAX_XX_XX_XX_XX_XX_XX_X
43._RUQ_153
CCAGCCTTGGAA_X_XX_XX_XX_XX_XX_XX_X
44._LCT_EEN_282
CCGGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X
45._LCT_EEN_73_/S
CCAGCCTTGGAAAAX_XX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_241

 
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Mars Center for Cocoa Science, Brazil
Location: 8841 2
 Dapeng Zhang, 2016

1._LCT_EEN_241 GC-08-269-8-41

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._LCT_EEN_241

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 6
 Dapeng Zhang, 2016

3._LCT_EEN_241

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 4
 Dapeng Zhang, 2016

4._LCT_EEN_241

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._LCT_EEN_241 GC-08-269-8-41

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._LCT_EEN_241 GC-08-269-8-41

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._LCT_EEN_241 GC-08-269-8-41

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._LCT_EEN_241

identical
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 3
 Dapeng Zhang, 2016

9._LCT_EEN_241 GC-08-269-8-41

identical
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._LCT_EEN_241 RUQ_185

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._LCT_EEN_241 RUQ_185

95.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 9 > FP
 Dapeng Zhang, 2016

13._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 6 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 2 > FP
 Dapeng Zhang, 2016

15._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 1 > FP
 Dapeng Zhang, 2016

16._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 11
 Dapeng Zhang, 2016

17._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 10
 Dapeng Zhang, 2016

18._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 7
 Dapeng Zhang, 2016

19._LCT_EEN_280

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

22._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

24._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

26._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._LCT_EEN_280 GC-08-070-1-92

94.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._LCT_EEN_302 RUQ_687

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._LCT_EEN_341_/S-2 RUQ_1548

92.9 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._LCT_EEN_223

92.6 %
34 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

31._LCT_EEN_146

92.4 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

32._LCT_EEN_378

92.4 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

33._LCT_EEN_108

91.9 %
31 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 X16 Y3
 Dapeng Zhang, 2014

34._LCT_EEN_63

91.9 %
31 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

35._LCT_EEN_85

91.7 %
30 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D254 T3
 Dapeng Zhang, 2014

36._LCT_EEN_280

91.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A144 T1
 Dapeng Zhang, 2016

37._LCT_EEN_255

91.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

38._LCT_EEN_282

91.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

39._LCT_EEN_283

91.2 %
34 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 18 T1
 Dapeng Zhang, 2014

40._LCT_EEN_300

91.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N2/448 T1
 Dapeng Zhang, 2014

41._LCT_EEN_327

91.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 61 T1
 Dapeng Zhang, 2014

42._LCT_EEN_57

91.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

43._LCT_EEN_37_/F RUQ_153

90.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

44._LCT_EEN_282

90.9 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

45._LCT_EEN_73_/S

90.3 %
31 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 X10 Y3
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP242 30TcSNP230
31TcSNP193 32TcSNP151 33TcSNP150 34TcSNP144 35TcSNP32