SNP Profiles matching LCT EEN 241

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
1._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
2._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
3._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
4._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
5._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
6._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
7._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	TT	CC	AT	GG	CC	AA	CT
8._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	TT	CC	_	GG	CC	AA	CT
9._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	TT	CC	_	GG	CC	AA	CT
10._RUQ_185	_	GG	CC	TT	_	_	_	_	_	_	_	CC	AA	_
11._RUQ_185	CC	GG	CC	TT	TT	AA	TT	CT	CC	AT	GG	CC	AA	CT
12._RUQ_687	_	GG	CC	TT	_	_	_	_	_	_	_	CC	AA	_
13._RUQ_1548	_	GG	CC	CT	_	_	_	_	_	_	_	CC	AA	_
14._LCT_EEN_300	CC	-	CC	TT	TT	AA	TT	TT	CC	-	GG	CC	AA	CT
15._LCT_EEN_378	CC	-	CC	TT	TT	AC	TT	TT	-	-	GG	CC	AA	TT
16._LCT_EEN_108	-	GG	CC	TT	-	AA	-	TT	-	AT	GG	CC	AA	CT
17._LCT_EEN_73_/S	-	GG	CC	TT	-	AC	-	TT	-	AT	GG	CC	AA	CT
18._LCT_EEN_85	-	GG	CC	TT	-	CC	-	TT	-	TT	GG	CC	AA	TT
19._LCT_EEN_255	CC	GG	CC	TT	TT	AA	TT	TT	-	AA	GG	CC	AA	TT
20._LCT_EEN_146	-	GG	CC	TT	TT	AA	TT	TT	-	AA	GG	CC	AA	TT
21._LCT_EEN_327	CC	-	CC	TT	TT	AA	TT	TT	CC	-	GG	CC	AA	TT
22._LCT_EEN_57	CC	-	CC	TT	TT	AA	TT	TT	CT	-	GG	CC	AA	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
1._LCT_EEN_241	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
2._LCT_EEN_241	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
3._LCT_EEN_241	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
4._GC-08-269-8-41	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
5._GC-08-269-8-41	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
6._GC-08-269-8-41	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
7._GC-08-269-8-41	AT	CG	TT	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
8._LCT_EEN_241	AT	CG	_	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
9._GC-08-269-8-41	AT	CG	_	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	AA
10._RUQ_185	_	_	_	TT	CG	GG	TT	CC	GG	GG	CC	AC	GG	_
11._RUQ_185	AT	CG	TT	CT	CG	GG	CT	CC	GG	GG	CC	AC	GG	AA
12._RUQ_687	_	_	_	TT	CC	GG	TT	CC	GG	GG	CC	CC	GG	_
13._RUQ_1548	_	_	_	TT	CC	GG	TT	CC	-	GG	CC	AC	GG	_
14._LCT_EEN_300	AA	CC	TT	TT	CC	GG	TT	CC	GG	GG	CC	CC	GG	AA
15._LCT_EEN_378	AT	CG	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG	AA
16._LCT_EEN_108	TT	CG	TT	TT	CC	GG	TT	CC	GG	GG	CC	AA	GG	AG
17._LCT_EEN_73_/S	AT	CG	TT	TT	CG	GT	CT	CC	CG	GG	CC	AA	GG	AA
18._LCT_EEN_85	AT	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG	AA
19._LCT_EEN_255	AA	CG	TT	TT	CC	GG	CT	CC	GG	GG	CC	CC	GG	AA
20._LCT_EEN_146	AT	CC	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG	AA
21._LCT_EEN_327	AA	CC	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG	AA
22._LCT_EEN_57	AA	CG	TT	TT	CC	GG	TT	CC	GG	GG	CC	AC	GG	AA

	29	30	31	32	33	34	35	36	37	38
_Input profile	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
1._LCT_EEN_241	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
2._LCT_EEN_241	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
3._LCT_EEN_241	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
4._GC-08-269-8-41	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
5._GC-08-269-8-41	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
6._GC-08-269-8-41	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
7._GC-08-269-8-41	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
8._LCT_EEN_241	_	CC	AG	_	CC	TT	GG	AA	AA	_	X_X	X_X	X_X	X_X
9._GC-08-269-8-41	_	CC	AG	_	CC	TT	GG	AA	AA	_	X_X	X_X	X_X	X_X
10._RUQ_185	TT	CC	AG	GG	CC	TT	GG	AA	_	_	X_X	X_X	X_X	X_X
11._RUQ_185	TT	CC	AG	GG	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
12._RUQ_687	TT	CC	GG	-	CC	TT	GG	AA	_	_	X_X	X_X	X_X	X_X
13._RUQ_1548	TT	CC	GG	-	CC	TT	GG	AA	_	_	X_X	X_X	X_X	X_X
14._LCT_EEN_300	TT	CC	GG	-	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
15._LCT_EEN_378	TT	CC	GG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X	X_X
16._LCT_EEN_108	TT	CC	AG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X	X_X
17._LCT_EEN_73_/S	TT	CC	AG	-	CC	TT	GG	AA	AA	CG	X_X	X_X	X_X	X_X
18._LCT_EEN_85	TT	CC	-	-	CC	TT	GG	AA	AA	CC	X_X	X_X	X_X	X_X
19._LCT_EEN_255	TT	CC	AG	-	CC	TT	GG	AC	AA	CC	X_X	X_X	X_X	X_X
20._LCT_EEN_146	TT	CC	GG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X	X_X
21._LCT_EEN_327	TT	CC	GG	-	CC	TT	GG	AA	AA	GG	X_X	X_X	X_X	X_X
22._LCT_EEN_57	TT	CC	GG	-	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_241

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Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

1._LCT_EEN_241

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

2._LCT_EEN_241

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

3._LCT_EEN_241

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._LCT_EEN_241 GC-08-269-8-41

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._LCT_EEN_241 GC-08-269-8-41

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._LCT_EEN_241 GC-08-269-8-41

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._LCT_EEN_241 GC-08-269-8-41

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._LCT_EEN_241

identical
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

9._LCT_EEN_241 GC-08-269-8-41

identical
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._LCT_EEN_241 RUQ_185

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._LCT_EEN_241 RUQ_185

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._LCT_EEN_302 RUQ_687

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._LCT_EEN_341_/S-2 RUQ_1548

92.9 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._LCT_EEN_300

92.9 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N2/448 T1

Dapeng Zhang, 2014

15._LCT_EEN_378

91.2 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

16._LCT_EEN_108

90.9 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X16 Y3

Dapeng Zhang, 2014

17._LCT_EEN_73_/S

90.9 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 X10 Y3

Dapeng Zhang, 2014

18._LCT_EEN_85

90.6 %
32 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B D254 T3

Dapeng Zhang, 2014

19._LCT_EEN_255

90.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

20._LCT_EEN_146

90 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

21._LCT_EEN_327

90 %
35 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 61 T1

Dapeng Zhang, 2014

22._LCT_EEN_57

90 %
35 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Barbados

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25