SNP Profiles matching LCT EEN 280

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 Key

 1234567891011121314
_Input profile
CCGGCCTTTTACTTGGTTCCAAGGCCAA
1._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
2._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
3._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
4._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
5._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
6._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
7._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
8._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
9._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
10._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
11._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
12._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
13._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
14._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
15._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
16._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
17._RUQ_185
_GGCCTT___GG____CCAA
18._RUQ_1638
_GGCCTT___GG____CCAA
19._RUQ_1683
_GGCCTT___GG____CCAA
20._LCT_EEN_241
CCGGCCTTTTAATTGGTTCC_GGCCAA
21._GC-08-269-8-41
CCGGCCTTTTAATTGGTTCC_GGCCAA
22._LCT_EEN_73_/S
-GGCCTT-AC-GGTT-ATGGCCAA
23._RUQ_102
_GGCCTT___GG____CCAA
24._RUQ_107
_GGCCTT___GT____CCAA
25._RUQ_180
_GGCCTT___GG____CCAA
26._RUQ_1547
_GGCCCT___GG____CCAA
27._LCT_EEN_163_/D
CCGGCCTTTTACTTGGTT-AAGGCCAA
28._LCT_EEN_223
CCGGCCTTTTAATTGGTT-AAGGCCAA
29._GC-07-045-2-25
CCGGCCTTCT_TTGGTTCC_GGCCAA
30._LCT_EEN_63
-GGCCTT-AA-GGTT-AAGGCCAA
 1516171819202122232425262728
_Input profile
CTAACGTTTTCGGGGGCTCCGGGGCCAA
1._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
2._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
3._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
4._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
5._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
6._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
7._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
8._LCT_EEN_280
CTAACGTTTTCGGG_CTCCGGGGCCAA
9._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
10._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
11._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
12._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
13._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
14._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
15._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
16._GC-08-070-1-92
CTAACGTTTTCGGG_CTCCGGGGCCAA
17._RUQ_185
____TTCGGG_TTCCGGGGCCAC
18._RUQ_1638
____TTGGGG_CTCCGGGGCCAA
19._RUQ_1683
____TTGGGG_CTCCGGGGCCAA
20._LCT_EEN_241
CTATCG_TTCGGGAGTTCCGGGGCCAC
21._GC-08-269-8-41
CTATCG_TTCGGGAGTTCCGGGGCCAC
22._LCT_EEN_73_/S
CTATCGTTTTCGGTGGCTCCCGGGCCAA
23._RUQ_102
____TTCCGT_TTCCGGGGCCAA
24._RUQ_107
____TTCCGG_CTCCGGGGCCAA
25._RUQ_180
____TTCCTT_TTCCGGGGCCAA
26._RUQ_1547
____TTCCGG_TTCCGGGGCCAA
27._LCT_EEN_163_/D
CTAACCTTTTCCTTAATTCCGGGGCCAA
28._LCT_EEN_223
CTAACCTTTTCCGGAGTTCCGGGGCCAA
29._GC-07-045-2-25
TTAACGTTTTCGGGAACCCCGGGGCCAA
30._LCT_EEN_63
TTAACGTTTTCCGGGGTTCCGGGGCCAC
 2930313233343536373839   
_Input profile
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
1._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
2._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
3._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
4._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
5._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
6._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
7._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
8._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
9._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
10._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
11._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
12._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
13._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
14._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
15._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
16._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
17._RUQ_185
GG_TTCCAGCCTTGGAA__X_XX_XX_X
18._RUQ_1638
GG_TTCCAACCTTGGCC__X_XX_XX_X
19._RUQ_1683
GG_TTCCAACCTTGGCC__X_XX_XX_X
20._LCT_EEN_241
GGAA_CCAGCCTTGGAAAA_X_XX_XX_X
21._GC-08-269-8-41
GGAA_CCAGCCTTGGAAAA_X_XX_XX_X
22._LCT_EEN_73_/S
GGAATTCCAGCCTTGGAAAACGX_XX_XX_X
23._RUQ_102
GG_TTCCGGCCTTGGAC__X_XX_XX_X
24._RUQ_107
GG_TTCTAGCCTTGGAA__X_XX_XX_X
25._RUQ_180
GG_TTCCAGCCTTGGAC__X_XX_XX_X
26._RUQ_1547
GG_TTCCGGCCTTGGAC__X_XX_XX_X
27._LCT_EEN_163_/D
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
28._LCT_EEN_223
GGAATTCCGGCCTTGGAAAAGGX_XX_XX_X
29._GC-07-045-2-25
GGAGTTCCAACCTTGGACAAGGX_XX_XX_X
30._LCT_EEN_63
GGAATTCCGGCCTTGGAAAAGGX_XX_XX_X

Input profile: LCT_EEN_280

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A144 T1
 Dapeng Zhang, 2016

1._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 9 > FP
 Dapeng Zhang, 2016

2._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 6 > FP
 Dapeng Zhang, 2016

3._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 2 > FP
 Dapeng Zhang, 2016

4._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 1 > FP
 Dapeng Zhang, 2016

5._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 11
 Dapeng Zhang, 2016

6._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 10
 Dapeng Zhang, 2016

7._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 7
 Dapeng Zhang, 2016

8._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

13._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

15._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._LCT_EEN_241 RUQ_185

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._UF_712 RUQ_1638

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_712 RUQ_1683

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._LCT_EEN_241

91.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 2
 Dapeng Zhang, 2016

21._LCT_EEN_241 GC-08-269-8-41

91.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LCT_EEN_73_/S

91.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 X10 Y3
 Dapeng Zhang, 2014

23._COCA_3308_/1_[CHA] RUQ_102

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._EQX_/J_[CHA] RUQ_107

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._LCT_EEN_163_/D RUQ_180

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._NAPO_25_[CHA] RUQ_1547

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._LCT_EEN_163_/D

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 104 T1
 Dapeng Zhang, 2014

28._LCT_EEN_223

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

29._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

90.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

30._LCT_EEN_63

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25