SNP Profiles matching LCTEEN 280

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCCTTTTACTTGGTTCCAAGGCCAA
1._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
2._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
3._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
4._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
5._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
6._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
7._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
8._LCT_EEN_280
CCGGCCTTTTAATTGGTTCCAAGGCCAA
9._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
10._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
11._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
12._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
13._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
14._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
15._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
16._GC-08-070-1-92
CCGGCCTTTTAATTGGTTCCAAGGCCAA
17._RUQ_185
__GGCCTT______GG________CCAA
18._RUQ_1638
__GGCCTT______GG________CCAA
19._RUQ_1683
__GGCCTT______GG________CCAA
20._LCT_EEN_241
CCGGCCTTTTAATTGGTTCC__GGCCAA
21._GC-08-269-8-41
CCGGCCTTTTAATTGGTTCC__GGCCAA
22._LCT_EEN_73_/S
__GGCCTT__AC__GGTT__ATGGCCAA
23._RUQ_102
__GGCCTT______GG________CCAA
24._RUQ_107
__GGCCTT______GT________CCAA
25._RUQ_180
__GGCCTT______GG________CCAA
26._RUQ_1547
__GGCCCT______GG________CCAA
27._LCT_EEN_163_/D
CCGGCCTTTTACTTGGTT__AAGGCCAA
28._LCT_EEN_223
CCGGCCTTTTAATTGGTT__AAGGCCAA
29._GC-07-045-2-25
CCGGCCTTCT__TTGGTTCC__GGCCAA
30._LCT_EEN_63
__GGCCTT__AA__GGTT__AAGGCCAA
 1516171819202122232425262728
_Input profile
CTAACGTTTTCGGGGGCTCCGGGGCCAA
1._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
2._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
3._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
4._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
5._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
6._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
7._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
8._LCT_EEN_280
CTAACGTTTTCGGG__CTCCGGGGCCAA
9._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
10._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
11._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
12._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
13._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
14._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
15._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
16._GC-08-070-1-92
CTAACGTTTTCGGG__CTCCGGGGCCAA
17._RUQ_185
________TTCGGG__TTCCGGGGCCAC
18._RUQ_1638
________TTGGGG__CTCCGGGGCCAA
19._RUQ_1683
________TTGGGG__CTCCGGGGCCAA
20._LCT_EEN_241
CTATCG__TTCGGGAGTTCCGGGGCCAC
21._GC-08-269-8-41
CTATCG__TTCGGGAGTTCCGGGGCCAC
22._LCT_EEN_73_/S
CTATCGTTTTCGGTGGCTCCCGGGCCAA
23._RUQ_102
________TTCCGT__TTCCGGGGCCAA
24._RUQ_107
________TTCCGG__CTCCGGGGCCAA
25._RUQ_180
________TTCCTT__TTCCGGGGCCAA
26._RUQ_1547
________TTCCGG__TTCCGGGGCCAA
27._LCT_EEN_163_/D
CTAACCTTTTCCTTAATTCCGGGGCCAA
28._LCT_EEN_223
CTAACCTTTTCCGGAGTTCCGGGGCCAA
29._GC-07-045-2-25
TTAACGTTTTCGGGAACCCCGGGGCCAA
30._LCT_EEN_63
TTAACGTTTTCCGGGGTTCCGGGGCCAC
 2930313233343536373839   
_Input profile
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
1._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
2._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
3._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
4._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
5._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
6._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
7._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
8._LCT_EEN_280
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
9._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
10._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
11._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
12._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
13._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
14._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
15._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
16._GC-08-070-1-92
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
17._RUQ_185
GG__TTCCAGCCTTGGAA____X_XX_XX_X
18._RUQ_1638
GG__TTCCAACCTTGGCC____X_XX_XX_X
19._RUQ_1683
GG__TTCCAACCTTGGCC____X_XX_XX_X
20._LCT_EEN_241
GGAA__CCAGCCTTGGAAAA__X_XX_XX_X
21._GC-08-269-8-41
GGAA__CCAGCCTTGGAAAA__X_XX_XX_X
22._LCT_EEN_73_/S
GGAATTCCAGCCTTGGAAAACGX_XX_XX_X
23._RUQ_102
GG__TTCCGGCCTTGGAC____X_XX_XX_X
24._RUQ_107
GG__TTCTAGCCTTGGAA____X_XX_XX_X
25._RUQ_180
GG__TTCCAGCCTTGGAC____X_XX_XX_X
26._RUQ_1547
GG__TTCCGGCCTTGGAC____X_XX_XX_X
27._LCT_EEN_163_/D
GGAATTCCAGCCTTGGACAAGGX_XX_XX_X
28._LCT_EEN_223
GGAATTCCGGCCTTGGAAAAGGX_XX_XX_X
29._GC-07-045-2-25
GGAGTTCCAACCTTGGACAAGGX_XX_XX_X
30._LCT_EEN_63
GGAATTCCGGCCTTGGAAAAGGX_XX_XX_X

Input profile: LCT_EEN_280

 
 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A144 T1
 Dapeng Zhang, 2016

1._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 9 > FP
 Dapeng Zhang, 2016

2._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 6 > FP
 Dapeng Zhang, 2016

3._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 2 > FP
 Dapeng Zhang, 2016

4._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 1 > FP
 Dapeng Zhang, 2016

5._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 11
 Dapeng Zhang, 2016

6._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 10
 Dapeng Zhang, 2016

7._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 7
 Dapeng Zhang, 2016

8._LCT_EEN_280

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8192 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

13._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

15._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._LCT_EEN_241 RUQ_185

93.5 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._UF_712 RUQ_1638

93.5 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_712 RUQ_1683

93.5 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._LCT_EEN_241

91.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8841 2
 Dapeng Zhang, 2016

21._LCT_EEN_241 GC-08-269-8-41

91.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LCT_EEN_73_/S

91.4 %
35 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 11 X10 Y3
 Dapeng Zhang, 2014

23._COCA_3308_/1_[CHA] RUQ_102

91.3 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._EQX_/J_[CHA] RUQ_107

91.3 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._LCT_EEN_163_/D RUQ_180

91.3 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._NAPO_25_[CHA] RUQ_1547

91.3 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._LCT_EEN_163_/D

90.8 %
38 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 104 T1
 Dapeng Zhang, 2014

28._LCT_EEN_223

90.8 %
38 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

29._SAN_MIGUEL_3161_[CHA] GC-07-045-2-25

90.5 %
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

30._LCT_EEN_63

90 %
35 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25