SNP Profiles matching LCT EEN 37 /F

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 1234567891011121314
_Input profile
CCGGCGCTCTCCTTGGTTCCATGGCCAA
1._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
2._LCT_EEN_37_/F
-GGCGCTCTCCTTGGTT-ATGGCCAA
3._RUQ_153
_GGCGCT___GG____CCAA
4._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
5._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
6._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
7._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
8._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
9._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
10._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
11._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
12._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
13._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
14._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
15._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
16._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
17._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
18._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
19._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
20._GC-08-160-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
21._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
22._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
23._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
24._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
25._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
26._POUND_4_/A
CCGGCGCTCT_TTGGTTCCATGGCCAA
27._GC-08-159-4-02
CCGGCGCTCT_TTGGTTCCATGGCCAA
28._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
29._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
30._LCT_EEN_73_/D
-GGCCCT-CC-GGTT-AAGGCCAA
 1516171819202122232425262728
_Input profile
CTAACGTTTTCGGGAATTCCGGGGCCAC
1._RUQ_153
CTAACGTTTTCGGGAATTCCGGGGCCAC
2._LCT_EEN_37_/F
CTAACGTTTTCGGGAATTCCGGGGCCAC
3._RUQ_153
____TTCGGG_TTCCCGGGCCAC
4._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
5._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
6._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
7._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
8._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
9._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
10._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
11._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
12._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
13._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
14._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
15._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
16._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
17._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
18._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
19._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
20._GC-08-160-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
21._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
22._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
23._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
24._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
25._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
26._POUND_4_/A
CTAACGTTTTCGGGGGTTCCGGGGCCAC
27._GC-08-159-4-02
CTAACGTTTTCGGGGGTTCCGGGGCCAC
28._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
29._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
30._LCT_EEN_73_/D
CTATCGCTTTCGGGAATTCCGGGGCCCC
 293031323334353637383940  
_Input profile
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
1._RUQ_153
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
2._LCT_EEN_37_/F
AGAAATCCAG-CCTTGGAAATCGX_XX_X
3._RUQ_153
AG_-CCAGCCCCTTGGAA__X_XX_X
4._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
5._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
6._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
7._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
8._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
9._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
10._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
11._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
12._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
13._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
14._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
15._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
16._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
17._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
18._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
19._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
20._GC-08-160-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
21._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
22._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
23._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
24._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
25._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
26._POUND_4_/A
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
27._GC-08-159-4-02
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
28._LCT_EEN_37_/F
AGAAATCCAGCCCC_GGAAATCGX_XX_X
29._GC-02-027-4-03
AGAAATCCAGCCCC_GGAAATCGX_XX_X
30._LCT_EEN_73_/D
AGAAATCCAG-CCTTGGACATCGX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F RUQ_153

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

16._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._LCT_EEN_37_/F GC-08-160-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

26._POUND_4_/A

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 4
 Dapeng Zhang, 2016

27._POUND_4_/A GC-08-159-4-02

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

28._LCT_EEN_37_/F

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F GC-02-027-4-03

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._LCT_EEN_73_/D

90 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D294 T8
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25