SNP Profiles matching LCT EEN 37 /F

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 Key

 1234567891011121314
_Input profile
CCGGCGCTCTTTGGTTCCATGGCCAACT
1._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
2._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
3._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
4._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
5._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
6._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
7._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
8._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
9._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
10._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
11._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
12._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
13._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
14._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
15._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
16._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
17._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
18._GC-08-160-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
19._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
20._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
21._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
22._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
23._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
24._POUND_4_/A
CCGGCGCTCTTTGGTTCCATGGCCAACT
25._GC-08-159-4-02
CCGGCGCTCTTTGGTTCCATGGCCAACT
26._RUQ_153
_GGCGCT__GG____CCAA_
27._LCT_EEN_37_/F
-GGCGCTCTTTGGTT-ATGGCCAACT
28._RUQ_153
CCGGCGCTCTTTGGTTCCATGGCCAACT
29._RUQ_153
CCGGCGCTCTTTGGTTCCATGGCCAACT
 1516171819202122232425262728
_Input profile
AACGTTTTCGGGGGTTCCGGGGCCACAG
1._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
2._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
3._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
4._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
5._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
6._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
7._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
8._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
9._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
10._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
11._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
12._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
13._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
14._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
15._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
16._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
17._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
18._GC-08-160-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
19._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
20._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
21._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
22._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
23._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
24._POUND_4_/A
AACGTTTTCGGGGGTTCCGGGGCCACAG
25._GC-08-159-4-02
AACGTTTTCGGGGGTTCCGGGGCCACAG
26._RUQ_153
___TTCGGG_TTCCCGGGCCACAG
27._LCT_EEN_37_/F
AACGTTTTCGGGAATTCCGGGGCCACAG
28._RUQ_153
AACGTTTTCGGGAATTCCGGGGCCACAG
29._RUQ_153
AACGTTTTCGGGAATTCCGGGGCCACAG
 29303132333435363738    
_Input profile
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
1._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
2._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
3._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
4._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
5._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
6._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
7._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
8._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
9._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
10._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
11._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
12._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
13._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
14._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
15._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
16._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
17._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
18._GC-08-160-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
19._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
20._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
21._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
22._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
23._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
24._POUND_4_/A
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
25._GC-08-159-4-02
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
26._RUQ_153
_-CCAGCCCCGGAA__X_XX_XX_XX_X
27._LCT_EEN_37_/F
AAATCCAG-CCGGAAATCGX_XX_XX_XX_X
28._RUQ_153
AAATCCAGCCCCGGAAATGGX_XX_XX_XX_X
29._RUQ_153
AAATCCAGCCCCGGAAATGGX_XX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

4._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

13._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

15._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

16._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._LCT_EEN_37_/F GC-08-160-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

24._POUND_4_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 4
 Dapeng Zhang, 2016

25._POUND_4_/A GC-08-159-4-02

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._LCT_EEN_37_/F RUQ_153

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._LCT_EEN_37_/F

97.1 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

28._LCT_EEN_37_/F RUQ_153

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F RUQ_153

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25