SNP Profiles matching MAN 15/2

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACGCCCTCCTTGTCTTTAAGGCTAA
1._MAN_15_/2_[BRA]___
CCAACGCCCTCCTTGTCTTTAAGGCTAA
2._MAN_15_/2_[BRA]___
CCAACGCCCTCCTTGTCTTTAAGGCTAA
3._MAN_15_/2_[BRA]___
CCAACGCCCTCCTTGTCTTTAAGGCTAA
4._MAN_15_/2_[BRA]___
CCAACGCCCT__TTGTCTTTAAGGCTAA
5._MAN_15_/2_[BRA]___
CCAACGCCCT__TTGTCTTTAAGGCTAA
6._MAN_15_/2_[BRA]___
CCAACGCCCT__TTGTCTTTAAGGCTAA
7._MAN_15_/2_[BRA]___
CCAACGCCCT__TTGTCTTTAAGGCTAA
8._MAN_15_/2_[BRA]___
CCAACGCCCT__TTGTCTTTAAGGCTAA
9._MAN_15_/2_[BRA]___
CCAACGCCCT__TTGTCTTTAAGGCTAA
10._MAN_15_/60_[BRA]___
__AACGCC________________CTAA
11._MAN_15_/2_[BRA]___
CCAACGCCCTCCTTGTCTTTAAAGCTAA
12._IMC_119___
CCAACGCCCT__TTGTCCTTAAAGCTAA
13._IMC_119___
CCAACGCCCT__TTGTCCTTAAAGCTAA
14._IMC_119___
CCAACGCCCT__TTGTCCTTAAAGCTAA
15._IMC_119___
CCAACGCCCT__TTGTCCTTAAAGCTAA
16._IMC_119___
CCAACGCCCT__TTGTCCTTAAAGCTAA
17._IMC_119___
CCAACGCCCT__TTGTCCTTAAAGCTAA
18._IMC_119___
CCAACGCCCT__TTGTCCTTAAAGCTAA
19._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
20._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
21._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
22._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
23._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
24._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
25._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
26._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
27._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
28._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
29._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
30._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
31._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
32._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
33._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
34._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
35._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
36._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
37._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
38._LP_1_/41_[POU]___
CCAACGCCCT__TTGTCCTTAAAGCTAA
39._MAN_15_/2_[BRA]___
CCAACGCCCTCCTTGTCTTTAAAGCTAA
40._MAN_15_/2_[BRA]___
CCAGCGCCCTCCTTGTCTTTAAAGCTAA
41._MAN_15_/2_[BRA]___
__AACGCC________________CTAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCTGGGGAACCACCGGTCCAC
1._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
2._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
3._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
4._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
5._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
6._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
7._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
8._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
9._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACCGGTCCAC
10._MAN_15_/60_[BRA]___
________TTGGGG__CCACCGGTCCAC
11._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
12._IMC_119___
CTAAGGCTCTGGGGAACCACGGGTCCAC
13._IMC_119___
CTAAGGCTCTGGGGAACCACGGGTCCAC
14._IMC_119___
CTAAGGCTCTGGGGAACCACGGGTCCAC
15._IMC_119___
CTAAGGCTCTGGGGAACCACGGGTCCAC
16._IMC_119___
CTAAGGCTCTGGGGAACCACGGGTCCAC
17._IMC_119___
CTAAGGCTCTGGGGAACCACGGGTCCAC
18._IMC_119___
CTAAGGCTCTGGGGAACCACGGGTCCAC
19._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
20._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
21._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
22._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
23._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
24._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
25._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
26._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
27._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
28._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
29._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
30._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
31._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
32._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
33._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
34._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
35._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
36._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
37._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
38._LP_1_/41_[POU]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
39._MAN_15_/2_[BRA]___
__AAGGCTCTGGGGAACCACGGGTCCAC
40._MAN_15_/2_[BRA]___
CTAAGGCTCTGGGGAACCACGGGTCCAC
41._MAN_15_/2_[BRA]___
________TTGGGG__CCACCGGTCCAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAATTAACGAACCGTCCATGGX_XX_X
1._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
2._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
3._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
4._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
5._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
6._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
7._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
8._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
9._MAN_15_/2_[BRA]___
AGGGAATTAACGAACCGTCCATGGX_XX_X
10._MAN_15_/60_[BRA]___
AG__AATTAACGACCCGTCC____X_XX_X
11._MAN_15_/2_[BRA]___
AGGGAATTAGCGACCTGTCCATGGX_XX_X
12._IMC_119___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
13._IMC_119___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
14._IMC_119___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
15._IMC_119___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
16._IMC_119___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
17._IMC_119___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
18._IMC_119___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
19._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
20._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
21._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
22._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
23._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
24._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
25._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
26._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
27._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
28._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
29._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
30._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
31._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
32._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
33._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
34._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
35._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
36._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
37._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
38._LP_1_/41_[POU]___
AGGGAATTAGCGAACTGTCCATGGX_XX_X
39._MAN_15_/2_[BRA]___
AGGGAATTAGCGACCTGTCCATGGX_XX_X
40._MAN_15_/2_[BRA]___
AGGGAATTAGCGACCTGTCCATGGX_XX_X
41._MAN_15_/2_[BRA]___
AG__AATTAGCGACCTGTCC____X_XX_X

Input profile: MAN_15_/2_[BRA]

 
Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

1._MAN_15_/2_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

2._MAN_15_/2_[BRA] GC-05-072-2-23

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._MAN_15_/2_[BRA] GC-05-072-2-23

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

4._MAN_15_/2_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

5._MAN_15_/2_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

6._MAN_15_/2_[BRA]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016

7._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

9._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._MAN_15_/60_[BRA] RUQ_87

95.7 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._MAN_15_/2_[BRA]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

12._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

14._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

15._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._IMC_119 GC-08-050-1-61

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

20._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

21._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

22._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

23._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

24._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

25._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

26._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

27._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

28._LP_1_/41_[POU]

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016

29._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

32._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

33._LP_1_/41_[POU] GC-05-055-2-06

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

34._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

35._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

36._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

37._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

38._LP_1_/41_[POU] GC-05-148-4-01

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

39._MAN_15_/2_[BRA]

93.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

40._MAN_15_/2_[BRA] RUQ_86

92.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

41._MAN_15_/2_[BRA] RUQ_86

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25