SNP Profiles matching NA 45

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
1._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
2._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
3._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
4._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
5._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
6._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
7._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
8._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
9._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
10._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
11._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
12._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
13._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
14._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
15._NA_45	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
16._GC-01-111-6-08	CC	AA	CG	TT	TT	_	CT	TT	CC	CC	AA	GG	CC	AG
17._SPA_9_[COL]	CC	AA	CG	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
1._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
2._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
3._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
4._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
5._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
6._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
7._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
8._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
9._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
10._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
11._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
12._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
13._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
14._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
15._NA_45	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
16._GC-01-111-6-08	TT	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC
17._SPA_9_[COL]	TT	AA	GG	CC	CC	CG	GG	AA	CC	AA	GG	GG	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
1._NA_45	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
2._NA_45	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
3._NA_45	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
4._NA_45	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
5._NA_45	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
6._NA_45	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
7._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
8._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
9._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
10._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
11._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
12._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X
13._NA_45	AA	GG	AA	CT	AG	CG	AA	_	GG	AC	TT	GG	X_X	X_X
14._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	_	GG	AC	TT	GG	X_X	X_X
15._NA_45	AA	GG	AA	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
16._GC-01-111-6-08	AA	GG	AA	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
17._SPA_9_[COL]	AA	GG	AA	CT	AA	CG	AC	CT	GG	AC	TT	GG	X_X	X_X

Input profile: NA_45

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 673

Dapeng Zhang, 2016

1._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 3 > FP

Dapeng Zhang, 2016

2._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 11 > F

Dapeng Zhang, 2016

3._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 1 > FP

Dapeng Zhang, 2016

4._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 10

Dapeng Zhang, 2016

5._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 4

Dapeng Zhang, 2016

6._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._NA_45 GC-01-111-6-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._NA_45 GC-01-111-6-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._NA_45 GC-01-111-6-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

10._NA_45 GC-01-111-6-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._NA_45 GC-01-111-6-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

12._NA_45 GC-01-111-6-08

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

13._NA_45

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 14 > F

Dapeng Zhang, 2016

14._NA_45 GC-01-111-6-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

15._NA_45

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 9

Dapeng Zhang, 2016

16._NA_45 GC-01-111-6-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

17._SPA_9_[COL]

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25