SNP Profiles matching NA 45

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
1._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
2._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
3._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
4._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
5._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
6._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
7._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
8._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
9._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
10._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
11._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
12._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
13._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
14._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
15._NA_45	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
16._GC-01-111-6-08	CC	AA	CG	TT	TT	CT	TT	CC	CC	AA	GG	CC	AG	TT
17._SPA_9_[COL]	CC	AA	CG	TT	TT	TT	GT	CC	CC	AA	GG	CC	AG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
1._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
2._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
3._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
4._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
5._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
6._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
7._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
8._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
9._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
10._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
11._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
12._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
13._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
14._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
15._NA_45	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
16._GC-01-111-6-08	AA	GG	CT	CC	CG	GG	AA	CC	AA	GG	GT	TT	CC	AA
17._SPA_9_[COL]	AA	GG	CC	CC	CG	GG	AA	CC	AA	GG	GG	TT	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
1._NA_45	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
2._NA_45	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
3._NA_45	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
4._NA_45	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
5._NA_45	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
6._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
7._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
8._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
9._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
10._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
11._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
12._NA_45	GG	AA	CT	AG	CG	AA	CC	GG	AC	TT	GG	X_X	X_X	X_X
13._NA_45	GG	AA	CT	AG	CG	AA	_	GG	AC	TT	GG	X_X	X_X	X_X
14._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	_	GG	AC	TT	GG	X_X	X_X	X_X
15._NA_45	GG	AA	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
16._GC-01-111-6-08	GG	AA	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X	X_X
17._SPA_9_[COL]	GG	AA	CT	AA	CG	AC	CT	GG	AC	TT	GG	X_X	X_X	X_X

Input profile: NA_45

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Mars Center for Cocoa Science, Brazil

Location: 1608 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 3 > FP

Dapeng Zhang, 2016

2._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 11 > F

Dapeng Zhang, 2016

3._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 1 > FP

Dapeng Zhang, 2016

4._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 10

Dapeng Zhang, 2016

5._NA_45

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 4

Dapeng Zhang, 2016

6._NA_45 GC-01-111-6-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._NA_45 GC-01-111-6-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._NA_45 GC-01-111-6-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._NA_45 GC-01-111-6-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._NA_45 GC-01-111-6-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._NA_45 GC-01-111-6-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

12._NA_45

identical
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 673

Dapeng Zhang, 2016

13._NA_45

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 14 > F

Dapeng Zhang, 2016

14._NA_45 GC-01-111-6-08

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

15._NA_45

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1608 9

Dapeng Zhang, 2016

16._NA_45 GC-01-111-6-08

98.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

17._SPA_9_[COL]

91 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25