SNP Profiles matching OC 67

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
1._OC_67_[VEN]___	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
2._OC_67_[VEN]___	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
3._OC_67_[VEN]___	CC	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	TT	AA
4._OC_67_[VEN]___	__	AG	CG	CT	TT	AA	CC	__	CT	CT	AA	AA	TT	AA
5._OC_67_[VEN]___	__	AG	CG	CT	TT	AA	CC	__	CT	CT	AA	AA	TT	AA
6._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
7._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
8._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
9._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
10._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
14._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
15._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
16._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
17._SC_1_[COL]___	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
18._UF_668___	__	__	CG	CT	TT	AA	CC	GT	CT	__	AA	AA	__	__
19._SC_1_[COL]___	CT	AG	__	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
20._SC_1_[COL]___	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
21._SC_1_[COL]___	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
1._OC_67_[VEN]___	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
2._OC_67_[VEN]___	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
3._OC_67_[VEN]___	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
4._OC_67_[VEN]___	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
5._OC_67_[VEN]___	CT	AA	GG	TT	CC	GG	GT	GG	CC	CC	CG	GT	CT	CC
6._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
7._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
8._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
9._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
10._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
11._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
12._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
13._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
14._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
15._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
16._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
17._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	GG	CT	CC	CG	GT	CT	CC
18._UF_668___	CT	__	GG	TT	CC	CG	GT	AG	CT	__	CC	__	CT	CC
19._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC
20._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC
21._SC_1_[COL]___	CT	AA	GG	TT	CC	GG	GT	AG	CT	CC	CG	GT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
1._OC_67_[VEN]___	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
2._OC_67_[VEN]___	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
3._OC_67_[VEN]___	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
4._OC_67_[VEN]___	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
5._OC_67_[VEN]___	GG	GG	AT	CT	AG	CG	AC	TT	GT	AA	AT	GG	X_X	X_X
6._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
7._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
8._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
9._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
10._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
11._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
12._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
13._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
14._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
15._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
16._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
17._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
18._UF_668___	__	GG	__	CT	AG	__	AC	__	GT	AC	AT	GG	X_X	X_X
19._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
20._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
21._SC_1_[COL]___	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X

Input profile: OC_67_[VEN]

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Mars Center for Cocoa Science, Brazil

Location: 8904 4

Dapeng Zhang, 2016

1._OC_67_[VEN]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8904 3

Dapeng Zhang, 2016

2._OC_67_[VEN] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

3._OC_67_[VEN] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

4._OC_67_[VEN]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8904 1

Dapeng Zhang, 2016

5._OC_67_[VEN] NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 4

Dapeng Zhang, 2016

7._SC_1_[COL]

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 5

Dapeng Zhang, 2016

8._SC_1_[COL]

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 12

Dapeng Zhang, 2016

9._SC_1_[COL]

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 13

Dapeng Zhang, 2016

10._SC_1_[COL]

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1616 2 > FP

Dapeng Zhang, 2016

11._SC_1_[COL]

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1616 9 > FP

Dapeng Zhang, 2016

12._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

13._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

16._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

17._SC_1_[COL] GC-01-119-6-16

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

18._UF_668

91.1 %
28 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8 Row 27 31_33

Dapeng Zhang, 2016

19._SC_1_[COL] RUQ_41

91 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._SC_1_[COL]

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C274 T1

Dapeng Zhang, 2016

21._SC_1_[COL]

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C319 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25