SNP Profiles matching PA 300

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 Key

 1234567891011121314
_Input profile
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
1._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
2._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
3._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
4._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
5._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
6._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
7._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
8._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
9._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
10._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
11._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
12._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
13._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
14._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
15._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
16._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
17._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
18._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
19._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
20._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
21._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
22._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
23._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
24._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
25._GC-08-166-4-09
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
26._PA_300_[PER]
CCAG_CCTTCCTTTTCCCCAAAGCCAA
27._PA_300_[PER]
CCAGCGCC_CCTTTTCCCCAAAGCCAA
28._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
29._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
30._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
31._GC-01-120-6-17
CCAG_CCTTCCTTTTCCCCAAAGCCAA
32._GC-01-120-6-17
CCAGCGCC_CCTTTTCCCCAAAGCCAA
33._GC-01-120-6-17
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
34._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
35._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
36._PA_300_[PER]
CCAGCGCCTTCCTTTTCCCCAAAGCCAA
37._PA_300_[PER]
CCAGCGCCTTCCTTTTCC_AAAGCCAA
38._PA_300_[PER]
CCAGCGCCTTCCTTTTCC_AAAGCCAA
 1516171819202122232425262728
_Input profile
CCAACGCCCCGGAGTTCCGGGGTTCCAG
1._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
2._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
3._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
4._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
5._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
6._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
7._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
8._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
9._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
10._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
11._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
12._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
13._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
14._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
15._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
16._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
17._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
18._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
19._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
20._GC-08-166-4-09
CCAACGCCCCGGAGTTCCGGGGTTCCAG
21._GC-08-166-4-09
CCAACGCCCCGGAGTTCCGGGGTTCCAG
22._GC-08-166-4-09
CCAACGCCCCGGAGTTCCGGGGTTCCAG
23._GC-08-166-4-09
CCAACGCCCCGGAGTTCCGGGGTTCCAG
24._GC-08-166-4-09
CCAACGCCCCGGAGTTCCGGGGTTCCAG
25._GC-08-166-4-09
CCAACGCCCCGGAGTTCCGGGGTTCCAG
26._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
27._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
28._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGG_CCAG
29._PA_300_[PER]
CCAACGCCCCGGAGTTCCGGGGTTCCAG
30._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
31._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
32._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGGTTCCAG
33._GC-01-120-6-17
CCAACGCCCCGGAGTTCCGGGG_CCAG
34._PA_300_[PER]
CCAACGCCCCGGAATTCCGGGGTTCCAG
35._PA_300_[PER]
CCAACGCCCCGGAATTCCGGGGTTCCAG
36._PA_300_[PER]
CCAACGCCCCGGAATTCCGGGGTTCCAG
37._PA_300_[PER]
CCAACGCCCCGGAATTCCGGGGTTCCAG
38._PA_300_[PER]
CCAACGCCCCGGAATTCCGGGGTTCCAG
 2930313233343536373839   
_Input profile
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
1._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
2._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
3._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
4._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
5._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
6._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
7._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
8._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
9._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
10._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
11._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
12._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
13._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
14._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
15._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
16._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
17._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
18._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
19._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
20._GC-08-166-4-09
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
21._GC-08-166-4-09
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
22._GC-08-166-4-09
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
23._GC-08-166-4-09
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
24._GC-08-166-4-09
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
25._GC-08-166-4-09
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
26._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
27._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
28._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
29._PA_300_[PER]
GGAACCGGCCCC_GGAAATGGX_XX_XX_X
30._GC-01-120-6-17
GGAACCGGCCCC_GGAAATGGX_XX_XX_X
31._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
32._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
33._GC-01-120-6-17
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
34._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
35._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
36._PA_300_[PER]
GGAACCGGCCCCCTGGAAATGGX_XX_XX_X
37._PA_300_[PER]
GGAACCGG_CCCTGGAAATGGX_XX_XX_X
38._PA_300_[PER]
GGAACCGG_CCCTGGAAATGGX_XX_XX_X

Input profile: PA_300_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 1617 3
 Dapeng Zhang, 2016

1._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 7
 Dapeng Zhang, 2016

2._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 9
 Dapeng Zhang, 2016

3._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1617 13
 Dapeng Zhang, 2016

4._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 11 > F
 Dapeng Zhang, 2016

5._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 14 > F
 Dapeng Zhang, 2016

6._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 6 > FP
 Dapeng Zhang, 2016

7._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8409 2
 Dapeng Zhang, 2016

8._PA_300_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8409 5
 Dapeng Zhang, 2016

9._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8409 6
 Dapeng Zhang, 2016

10._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8409 7
 Dapeng Zhang, 2016

11._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8409 9
 Dapeng Zhang, 2016

12._PA_300_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8409 12
 Dapeng Zhang, 2016

13._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

15._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

18._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._PA_300_[PER] GC-01-120-6-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._PA_300_[PER] GC-08-166-4-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._PA_300_[PER] GC-08-166-4-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._PA_300_[PER] GC-08-166-4-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._PA_300_[PER] GC-08-166-4-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._PA_300_[PER] GC-08-166-4-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._PA_300_[PER] GC-08-166-4-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

26._PA_300_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

27._PA_300_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 8
 Dapeng Zhang, 2016

28._PA_300_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 10
 Dapeng Zhang, 2016

29._PA_300_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1617 1 > FP
 Dapeng Zhang, 2016

30._PA_300_[PER] GC-01-120-6-17

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._PA_300_[PER] GC-01-120-6-17

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

32._PA_300_[PER] GC-01-120-6-17

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._PA_300_[PER] GC-01-120-6-17

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

34._PA_300_[PER]

98.7 %
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P35 703
 Dapeng Zhang, 2016

35._PA_300_[PER]

98.7 %
39 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 191 I-035
 Dapeng Zhang, 2016

36._PA_300_[PER]

98.7 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Rep1 C0186 50
 Dapeng Zhang, 2016

37._PA_300_[PER]

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D544
 Dapeng Zhang, 2016

38._PA_300_[PER]

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E407 T14
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25