SNP Profiles matching PA-72

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
3._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._PA_56_[PER]___
__GGCGCT______TT________CCAG
11._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
12._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
13._CRUZ_7_/14___
__AGCGCC______TT________CCAG
14._PA_175_[PER]___
__GGCGCT______TT________CCAA
15._PA_71_[PER]___
__AGCGCC______TT________CCAG
16._MOQ_6_/95___
__GGGGCC______TT________CCAG
17._PA_299_[PER]___
__GGCCCT______TT________CCAG
18._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
19._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
20._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
21._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
22._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
23._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
24._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
25._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
26._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
27._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
28._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
29._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
30._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
31._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
32._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
33._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
34._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
35._PA_175_[PER]___
CCGGCGCTTTACCCTTCCCCAAAGCCAA
36._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
37._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
38._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
39._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
40._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
41._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
42._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
43._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
44._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
45._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
1._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
2._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
3._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
4._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
5._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
6._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
7._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
8._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
9._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
10._PA_56_[PER]___
________CCGGGG__TTCCCGGTCTAC
11._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._CRUZ_7_/14___
________CCGGGG__TTCCCGGTCTAC
14._PA_175_[PER]___
________CCGGGG__TTACCGGTCTAC
15._PA_71_[PER]___
________CCGGGG__TTCCCGGTCTAC
16._MOQ_6_/95___
________CCGGGG__TTCCCGGTCCAC
17._PA_299_[PER]___
________CCGGGG__TTCCCGGGCTAC
18._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
19._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
20._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
21._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
22._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
23._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
24._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
25._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
26._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
27._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
28._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
29._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
30._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
31._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
32._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
33._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
34._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
35._PA_175_[PER]___
TTAACGCTCCGGGGGGTTACCGGTCTAC
36._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
37._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
38._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
39._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
40._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
41._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
42._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
43._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
44._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
45._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
1._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
2._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
3._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
4._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
5._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
6._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
7._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
8._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
9._PA_56_[PER]___
AAGGCCAGCCAACCGGCCAAGGX_XX_XX_X
10._PA_56_[PER]___
AA__CCAGCCACCCGGCC____X_XX_XX_X
11._PA_56_[PER]___
AAGGCCAGCCACCCGGCCAAGGX_XX_XX_X
12._PA_56_[PER]___
AAGGCCAGCCACCCGGCCAAGGX_XX_XX_X
13._CRUZ_7_/14___
AA__CCAGCCAACCGGAC____X_XX_XX_X
14._PA_175_[PER]___
AA__CCGGCCAACCGGCC____X_XX_XX_X
15._PA_71_[PER]___
AA__CCAGCCAACCGGAC____X_XX_XX_X
16._MOQ_6_/95___
AA__CCAGCCACCCGGCC____X_XX_XX_X
17._PA_299_[PER]___
AA__CCGGCCAACCGGAC____X_XX_XX_X
18._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
19._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
20._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
21._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
22._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
23._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
24._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
25._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
26._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
27._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
28._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
29._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
30._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
31._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
32._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
33._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
34._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
35._PA_175_[PER]___
AAGGCCGGCCAACCGGCCATGGX_XX_XX_X
36._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
37._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
38._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
39._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
40._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
41._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
42._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
43._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
44._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X
45._PA_72_[PER]___
AAGGCCAGCCAACCGTACAAGGX_XX_XX_X

Input profile: PA_56_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016

1._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

2._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

3._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

4._PA_56_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

5._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

9._PA_56_[PER] NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

10._PA_56_[PER] RUQ_32

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_56_[PER] RUQ_32

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._PA_56_[PER]

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

13._CRUZ_7_/14 RUQ_1569

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_175_[PER] RUQ_37

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_71_[PER] RUQ_1564

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._MOQ_6_/95 RUQ_1436

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_299_[PER] RUQ_1621

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016

19._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

20._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

21._PA_175_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

22._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

23._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

24._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

25._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

26._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

27._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

28._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

29._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

30._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

31._PA_72_[PER]

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

32._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

34._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

35._PA_175_[PER] NA

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

36._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

37._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

39._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

40._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

41._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

42._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

43._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

44._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

45._PA_72_[PER] GC-08-051-1-62

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25