SNP Profiles matching IMC 47

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCTTTACCCTTCCCCAAGGCCAG
1._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
2._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
3._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
4._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
5._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
6._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
7._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
8._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
9._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
10._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
11._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
12._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
13._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
14._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
15._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
16._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
17._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
18._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
19._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
20._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
21._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
22._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
23._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
24._PA_41_[PER]___
CCAGGGCCTTACCTTTCCCCAAGGCCAG
25._CRUZ_7_/14___
__AGCGCC______TT________CCAG
26._PA_56_[PER]___
__GGCGCT______TT________CCAG
27._PA_71_[PER]___
__AGCGCC______TT________CCAG
28._SLA_16___
__GGGGCT______TT________CCAG
29._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
30._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
31._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
32._PA_32_[PER]___
CCAGGGCTTTACCTTTCCCCAAAGCCAA
33._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
34._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
35._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
36._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
37._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
38._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
39._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
40._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
41._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
42._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
43._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
44._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
45._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
46._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
47._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
48._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._PA_72_[PER]___
CTAAGGCTCCGG__AATTCCCGGTCTAC
2._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
3._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
4._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
5._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
6._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
7._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
8._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
9._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
10._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
11._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
15._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
16._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
17._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
18._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
19._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
20._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
21._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
22._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
23._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
24._PA_41_[PER]___
CTAAGGCCCCGG__AATTCCCGGTCTAC
25._CRUZ_7_/14___
________CCGGGG__TTCCCGGTCTAC
26._PA_56_[PER]___
________CCGGGG__TTCCCGGTCTAC
27._PA_71_[PER]___
________CCGGGG__TTCCCGGTCTAC
28._SLA_16___
________CCGGGG__TTCCCGGGCTAC
29._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
30._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
31._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
32._PA_32_[PER]___
CTAACGCCCCGG__AATTCCCGGTCTAC
33._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
34._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
35._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
36._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
37._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
38._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
39._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
40._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
41._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
42._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
43._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
44._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
45._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
46._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
47._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
48._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCACCCGTACAAGGX_XX_X
1._PA_72_[PER]___
AAGGAACCAG__ACCCGTACAAGGX_XX_X
2._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
3._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
4._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
5._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
6._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
7._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
8._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
9._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
10._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
11._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
12._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
13._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
14._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
15._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
16._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
17._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
18._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
19._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
20._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
21._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
22._PA_56_[PER]___
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
23._PA_56_[PER]___
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
24._PA_41_[PER]___
AGGGAACCAG__ACCCGTACAAGGX_XX_X
25._CRUZ_7_/14___
AA__AACCAGCCAACCGGAC____X_XX_X
26._PA_56_[PER]___
AA__AACCAGCCACCCGGCC____X_XX_X
27._PA_71_[PER]___
AA__AACCAGCCAACCGGAC____X_XX_X
28._SLA_16___
AA__AACCAGCCACCTGGAC____X_XX_X
29._MO_9___
AAGGAACCAACC__CCGTACAAGGX_XX_X
30._MO_9___
AAGGAACCAACC__CCGTACAAGGX_XX_X
31._MO_9___
AAGGAACCAA__ACCCGTACAAGGX_XX_X
32._PA_32_[PER]___
AAGGAACCGG__ACCCGTACAAGGX_XX_X
33._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
34._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
35._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
36._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
37._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
38._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
39._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
40._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
41._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
42._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
43._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
44._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
45._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
46._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
47._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
48._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X

Input profile: PA_72_[PER]

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

1._PA_72_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

2._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

3._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

4._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

5._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

6._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

7._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

8._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

9._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

10._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

11._PA_72_[PER]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._PA_56_[PER] RUQ_32

93.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._PA_56_[PER]

93.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

24._PA_41_[PER]

93.4 %
38 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

25._CRUZ_7_/14 RUQ_1569

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_71_[PER] RUQ_1564

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._SLA_16 RUQ_1092

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._MO_9

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

30._MO_9 GC-05-119-3-21

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

31._MO_9

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

32._PA_32_[PER]

90.8 %
38 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 253
 Dapeng Zhang, 2014

33._MO_9

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

34._MO_9

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

35._MO_9

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

36._MO_9

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

37._MO_9 GC-05-071-2-22

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

38._MO_9 GC-05-071-2-22

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

39._MO_9 GC-05-119-3-21

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

40._MO_9 GC-05-119-3-21

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

41._PA_56_[PER]

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

42._PA_56_[PER]

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

43._PA_56_[PER]

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

44._PA_56_[PER]

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

45._PA_56_[PER] NA

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

46._PA_56_[PER] NA

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

47._PA_56_[PER] NA

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

48._PA_56_[PER] NA

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25