SNP Profiles matching IMC 47

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCTTTACCCTTCCCCAAGGCCAG
1._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
2._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
3._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
4._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
5._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
6._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
7._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
8._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
9._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
10._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
11._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
12._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
13._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
14._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
15._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
16._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
17._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
18._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
19._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
20._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
21._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
22._CRUZ_7_/14___
__AGCGCC______TT________CCAG
23._PA_71_[PER]___
__AGCGCC______TT________CCAG
24._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
25._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
26._PA_41_[PER]___
CCAGGGCCTTACCTTTCCCCAAGGCCAG
27._PA_156_[PER]___
__AGGGCT______TT________CCAG
28._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
29._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
30._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
31._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
32._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
33._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
34._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
35._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
36._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
37._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
38._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
39._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
40._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
41._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
42._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
43._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
44._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
45._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
46._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
47._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
2._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
3._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
4._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
5._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
6._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
7._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
8._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
9._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
10._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
11._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
15._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
16._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
17._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
18._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
19._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
20._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
21._PA_72_[PER]___
CTAAGGCTCCGG__AATTCCCGGTCTAC
22._CRUZ_7_/14___
________CCGGGG__TTCCCGGTCTAC
23._PA_71_[PER]___
________CCGGGG__TTCCCGGTCTAC
24._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
25._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
26._PA_41_[PER]___
CTAAGGCCCCGG__AATTCCCGGTCTAC
27._PA_156_[PER]___
________CCGGGG__TTCCCGTTCCAC
28._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
29._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
30._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
31._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
32._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
33._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
34._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
35._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
36._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
37._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
38._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
39._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
40._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
41._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
42._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
43._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
44._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
45._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
46._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
47._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCAACCGTACAAGGX_XX_X
1._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
2._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
3._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
4._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
5._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
6._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
7._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
8._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
9._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
10._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
11._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
12._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
13._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
14._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
15._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
16._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
17._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
18._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
19._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
20._PA_72_[PER]___
AAGGAACCAGCCACCCGTACAAGGX_XX_X
21._PA_72_[PER]___
AAGGAACCAG__ACCCGTACAAGGX_XX_X
22._CRUZ_7_/14___
AA__AACCAGCCAACCGGAC____X_XX_X
23._PA_71_[PER]___
AA__AACCAGCCAACCGGAC____X_XX_X
24._PA_56_[PER]___
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
25._PA_56_[PER]___
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
26._PA_41_[PER]___
AGGGAACCAG__ACCCGTACAAGGX_XX_X
27._PA_156_[PER]___
AA__AACCAACCAACCGGAC____X_XX_X
28._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
29._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
30._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
31._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
32._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
33._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
34._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
35._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
36._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
37._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
38._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
39._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
40._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
41._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
42._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
43._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
44._MO_9___
AAGGAACCAACC__CCGTACAAGGX_XX_X
45._MO_9___
AAGGAACCAACC__CCGTACAAGGX_XX_X
46._PA_56_[PER]___
AAGG__CCAGCCAACCGGCCAAGGX_XX_X
47._PA_56_[PER]___
AAGG__CCAGCCAACCGGCCAAGGX_XX_X

Input profile: PA_72_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

1._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

2._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

3._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

4._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

5._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

6._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

7._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

8._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

9._PA_72_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

10._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

11._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._PA_72_[PER]

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

21._PA_72_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

22._CRUZ_7_/14 RUQ_1569

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._PA_71_[PER] RUQ_1564

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PA_56_[PER] RUQ_32

92.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._PA_56_[PER]

92.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

26._PA_41_[PER]

92.1 %
38 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

27._PA_156_[PER] RUQ_1531

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._MO_9

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

29._MO_9

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

30._MO_9

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

31._MO_9

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

32._MO_9 GC-05-071-2-22

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

33._MO_9 GC-05-071-2-22

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

34._MO_9 GC-05-119-3-21

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._MO_9 GC-05-119-3-21

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

36._PA_56_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

37._PA_56_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

38._PA_56_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

39._PA_56_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

40._PA_56_[PER] NA

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

41._PA_56_[PER] NA

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

42._PA_56_[PER] NA

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

43._PA_56_[PER] NA

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

44._MO_9

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

45._MO_9 GC-05-119-3-21

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

46._PA_56_[PER]

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016

47._PA_56_[PER] NA

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25